PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn205651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 96aa MW: 10819 Da PI: 4.3423 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.4 | 2.8e-12 | 16 | 47 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd +l+++++ +G++ WktIa + g Achn205651 16 KGAWTEEEDRKLAEYIEVHGSKKWKTIATKSG 47 79**************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.15E-8 | 9 | 45 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-11 | 9 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.294 | 11 | 43 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 5.1E-10 | 16 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.92E-6 | 18 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MASKNVKGCA KKVYNKGAWT EEEDRKLAEY IEVHGSKKWK TIATKSGMEA CAKENGDVEF 60 TFDVDDFFDF STEGTYGLEW VNKFLEVDDV ECVTE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028121494.1 | 4e-21 | transcription factor WER-like isoform X1 | ||||
Refseq | XP_028121495.1 | 2e-21 | transcription factor TT2-like isoform X2 | ||||
TrEMBL | V5SMS9 | 3e-28 | V5SMS9_GOSHI; MYB2 splice variant GGL1-3 | ||||
STRING | XP_002535033.1 | 5e-26 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 4e-11 | MYB-like 102 |