PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn204261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 470aa    MW: 50950.5 Da    PI: 8.7528
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn204261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.21.9e-1788176186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergfe....rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ + +L+ea++e+ ++l+rg+l++ +Weev++ ++erg +    ++ +qCk+k++nl+kr+k + ++++++   +ss++ +f+++e
  Achn204261  88 EWSDSAIETLLEAYTEKYSQLNRGNLRGRDWEEVAETVSERGDKqkacKTVEQCKNKIDNLKKRFKVELQRMNSG-GLTSSNWHWFKKIE 176
                 5*************************************66665411116889***************99999998.78999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.6E-2086176No hitNo description
Gene3DG3DSA:3.40.1160.102.5E-73214461IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.23227461IPR015963Uridylate kinase, bacteria
SuperFamilySSF536334.97E-58227460IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.21E-118230461No hitNo description
PfamPF006964.1E-24231440IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MSSCNDDFPL INGTSPKRIA SAGNEDVMAD EVSRIAVFYS PTTPLADAGD DSSNGKLTSH  60
RHKKPKHGVS AAAADSAAAA DYRKDREEWS DSAIETLLEA YTEKYSQLNR GNLRGRDWEE  120
VAETVSERGD KQKACKTVEQ CKNKIDNLKK RFKVELQRMN SGGLTSSNWH WFKKIEGIVG  180
NSGSMKSPSD EDKSGGGNSA YMLRQPKRYT SSSALINNTK SKSMPTPKWR RVVFKISGTA  240
LGGNCQSIDP KVALQIAREV STACRLGVEV AIVVGGRNFF CGDSWVSSTG LDRPTAYQIG  300
MMATVMNSVL LQSAFEKQGV QTRVQSAFPM PEVTEPYSRL RAIRHLEKGR VVIFGGIGAG  360
TGNPLFTTDT AAALRASEMN AEAVLKGTNV NGIYDCHSGN NSVMLDHISF REAVSRGVTS  420
MDMMAIQYCE ENGIPVVLFN LLEPGNISRA LCGDHVGTLI NQAVQAGRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-6322946150280Uridylate kinase
3nwy_B2e-6322946150280Uridylate kinase
3nwy_C2e-6322946150280Uridylate kinase
3nwy_D2e-6322946150280Uridylate kinase
3nwy_E2e-6322946150280Uridylate kinase
3nwy_F2e-6322946150280Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268973.10.0PREDICTED: uncharacterized protein LOC100260933
SwissprotQ8DM632e-73PYRH_THEEB; Uridylate kinase
TrEMBLA0A2R6PL380.0A0A2R6PL38_ACTCH; Uridylate kinase
STRINGVIT_13s0074g00240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-177Trihelix family protein