PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn204171

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 388aa MW: 44043.7 Da PI: 5.9907

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn204171	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.8	5.2e-50	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 l+pGfrFhPtdeelv++yLk+k+ +k++++ e++ e+d+yk+ePw+L +++k+++ e+yfFs+ d+ky +g r nrat +gyWkatgkd++v + kg Achn204171 16 LAPGFRFHPTDEELVQYYLKRKACAKPFRF-EAVLEIDVYKSEPWELAchSRLKSRDLEYYFFSPVDRKYGNGCRLNRATGKGYWKATGKDRSVRH-KG 112 579***********************99.88**********85347788888**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLvf+ grap+g++t+Wvmheyrl Achn204171 113 QTIGMKKTLVFHGGRAPDGKRTNWVMHEYRL 143 9**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.09E-58	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	55.426	16	166	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MAHELAEIVP PPPTSLAPGF RFHPTDEELV QYYLKRKACA KPFRFEAVLE IDVYKSEPWE 60 LACHSRLKSR DLEYYFFSPV DRKYGNGCRL NRATGKGYWK ATGKDRSVRH KGQTIGMKKT 120 LVFHGGRAPD GKRTNWVMHE YRLADRYLER AGVTQDAFVL CRIFQKSGLG PPNADRYAPF 180 IEEEWNDDVS MVIPGEEEPV NADDSQVEGN DFEQDTHSHN MAALYQTELP NACQNIPIFF 240 KRERPGYAPF PCTVDSEPIS VVLNKKSRHD DPNSSNANGS EDSTTTTHDL CTTNTSSALV 300 EIPLLESLDP KENHPKKLTA FDSANLEKSV PPGYLKFINN LENEILNVSM ERETLKIEVM 360 RAQAMINMLQ SRIDLLNKEN EDLKRVC*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MAHELAEIVP PPPTSLAPGF RFHPTDEELV QYYLKRKACA KPFRFEAVLE IDVYKSEPWE  60
LACHSRLKSR DLEYYFFSPV DRKYGNGCRL NRATGKGYWK ATGKDRSVRH KGQTIGMKKT  120
LVFHGGRAPD GKRTNWVMHE YRLADRYLER AGVTQDAFVL CRIFQKSGLG PPNADRYAPF  180
IEEEWNDDVS MVIPGEEEPV NADDSQVEGN DFEQDTHSHN MAALYQTELP NACQNIPIFF  240
KRERPGYAPF PCTVDSEPIS VVLNKKSRHD DPNSSNANGS EDSTTTTHDL CTTNTSSALV  300
EIPLLESLDP KENHPKKLTA FDSANLEKSV PPGYLKFINN LENEILNVSM ERETLKIEVM  360
RAQAMINMLQ SRIDLLNKEN EDLKRVC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-49	5	166	9	168	NAC domain-containing protein 19
3swm_B	2e-49	5	166	9	168	NAC domain-containing protein 19
3swm_C	2e-49	5	166	9	168	NAC domain-containing protein 19
3swm_D	2e-49	5	166	9	168	NAC domain-containing protein 19
3swp_A	2e-49	5	166	9	168	NAC domain-containing protein 19
3swp_B	2e-49	5	166	9	168	NAC domain-containing protein 19
3swp_C	2e-49	5	166	9	168	NAC domain-containing protein 19
3swp_D	2e-49	5	166	9	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028125951.1	0.0	NAC domain containing protein 50-like isoform X1
Refseq	XP_028125952.1	0.0	NAC domain containing protein 50-like isoform X2
Swissprot	Q9SQX9	1e-107	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	A0A2R6PKX3	0.0	A0A2R6PKX3_ACTCH; NAC domain-containing protein
STRING	XP_009619467.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3140	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	1e-108	NAC domain containing protein 50

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]