PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn202561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 345aa    MW: 37497.4 Da    PI: 8.4948
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn202561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17253286134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Achn202561 253 CMHCDITKTPQWRAGPMGPKTLCNACGVRYKSGR 286
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.0E-7432340IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.372247283IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-16247297IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14251284IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-15251310No hitNo description
CDDcd002025.52E-13252299No hitNo description
PfamPF003202.4E-15253286IPR000679Zinc finger, GATA-type
PROSITE patternPS003440253278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MLRLGTKERV RGGSVEGCGT RVHLIRGERE RKVRERKMMG SDFMDEIDCG SFFDHMDDLI  60
DFPADNGCGL GSDFPSIWAN PPGALLGSDP ILSNNNSASD LSAELSVPYE DIIQLEWLSN  120
FVEDSFSGGG MTLEKENSSI TKTLSHNHFH TLSPVSVLES SSSSSSTSSS GGKTMPPVSP  180
TQRGPHRARS KRPRPAAFHP RPAIQLVSPT SSESESFAES HPVRKKKKIK VFLPPVPVEA  240
NPNLNPSQGV RKCMHCDITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE YRPAASPTFV  300
PALHSNSHKK VLEMRTMTGD SASAIANTAE PELIPNKNPS LDYI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109479.11e-143GATA transcription factor 8-like
RefseqXP_028109480.11e-143GATA transcription factor 8-like
TrEMBLA0A2R6PLQ00.0A0A2R6PLQ0_ACTCH; GATA transcription factor
STRINGVIT_13s0019g04390.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-41GATA transcription factor 9