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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn200451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YB | ||||||||
Protein Properties | Length: 149aa MW: 16512.6 Da PI: 6.0715 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 47.9 | 3.3e-15 | 15 | 109 | 5 | 94 |
NF-YB 5 drflPianvsrimkkvlPanak...is..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++lP a v r++k+ l + +k is ++a e + fi ++++ a+d c++ kr+tin+dd++ al ++ f ++v plk+ l+++r + Achn200451 15 TEELPKAIVRRVVKEKLSQLSKegdISvfREALVAFSESARIFIHYLSATANDVCKESKRQTINADDVFKALEEIEFPEFVVPLKASLEEFRRKN 109 5789**********98876554222553368888899******************************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.4E-32 | 14 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.4E-11 | 17 | 86 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.19E-25 | 18 | 134 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAEKAATVEK AVAETEELPK AIVRRVVKEK LSQLSKEGDI SVFREALVAF SESARIFIHY 60 LSATANDVCK ESKRQTINAD DVFKALEEIE FPEFVVPLKA SLEEFRRKNA GKRSASKAKE 120 ANKKKKKESP VENGTEDKQD ENGAPDDN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 126 | RRKNAGKRSASKAKEANKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028057252.1 | 1e-71 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A2R6P755 | 6e-99 | A0A2R6P755_ACTCH; DNA polymerase epsilon subunit like | ||||
STRING | XP_010245113.1 | 5e-61 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-40 | nuclear factor Y, subunit B11 |