PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn199491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | AP2 | ||||||||
Protein Properties | Length: 490aa MW: 54551.1 Da PI: 6.5644 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.8 | 4.7e-12 | 198 | 254 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g Achn199491 198 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 254 78*******************433.44554535555.779999**************98 PP | |||||||
2 | AP2 | 48.9 | 1.6e-15 | 297 | 348 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t eeAa+a++ a+ k++g Achn199491 297 SVYRGVTRHHQNGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 348 78****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.14E-19 | 198 | 264 | No hit | No description |
Pfam | PF00847 | 4.3E-9 | 198 | 254 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-15 | 198 | 264 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.425 | 199 | 262 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-12 | 199 | 263 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-23 | 199 | 268 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 200 | 211 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-18 | 297 | 357 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-9 | 297 | 348 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.78E-25 | 297 | 358 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.5E-19 | 298 | 356 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.019 | 298 | 356 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 298 | 362 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 338 | 358 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MNNEGLEREE EEEEERGWRS YDNTTGENTP KLEDFLGCSY PNSPPNDPKN YCQQEDTFIN 60 LNYPNQDSIN HNPNISTNPS PFIQACPYNS FQTSDLNPNM NHSMYPYHVP FDGASSVSGF 120 KSWLRQTPYL GHEQCHGTHT FQSLSLAMNG HAENCGGPVV APPLEVADGG RKAVGGKATT 180 GRESVPRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQSRKG RQGGYDKEEK 240 AARAYDLAAL KYWGPTTHIN FPLSTYEKEL EEMKNMTRQE FVAMLRRKSS GFSRGASVYR 300 GVTRHHQNGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGTS AVTNFDINRY 360 DVKRICSSST LIGGDLAKRS SKDSAPTSIE DYNSCTSSAL PHPPILSITN DDPSEELVTD 420 TTANSEIPSP RSPKGSVLLG DYSQAYFGSQ GPQCGDGIDE IRTTRVGNLG LVHHQVPMFA 480 LWNESRVEL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012460575.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-129 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A2R6PTZ1 | 0.0 | A0A2R6PTZ1_ACTCH; AP2-like ethylene-responsive transcription factor | ||||
STRING | Gorai.012G011800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-127 | AP2 family protein |
Publications ? help Back to Top | |||
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