PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn199491
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 490aa    MW: 54551.1 Da    PI: 6.5644
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn199491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.7e-12198254155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Achn199491 198 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 254
                 78*******************433.44554535555.779999**************98 PP
2AP248.91.6e-15297348155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Achn199491 297 SVYRGVTRHHQNGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 348
                 78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.14E-19198264No hitNo description
PfamPF008474.3E-9198254IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-15198264IPR016177DNA-binding domain
PROSITE profilePS5103217.425199262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-12199263IPR001471AP2/ERF domain
SMARTSM003803.1E-23199268IPR001471AP2/ERF domain
PRINTSPR003671.5E-6200211IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18297357IPR016177DNA-binding domain
PfamPF008471.1E-9297348IPR001471AP2/ERF domain
CDDcd000183.78E-25297358No hitNo description
Gene3DG3DSA:3.30.730.109.5E-19298356IPR001471AP2/ERF domain
PROSITE profilePS5103219.019298356IPR001471AP2/ERF domain
SMARTSM003801.6E-32298362IPR001471AP2/ERF domain
PRINTSPR003671.5E-6338358IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MNNEGLEREE EEEEERGWRS YDNTTGENTP KLEDFLGCSY PNSPPNDPKN YCQQEDTFIN  60
LNYPNQDSIN HNPNISTNPS PFIQACPYNS FQTSDLNPNM NHSMYPYHVP FDGASSVSGF  120
KSWLRQTPYL GHEQCHGTHT FQSLSLAMNG HAENCGGPVV APPLEVADGG RKAVGGKATT  180
GRESVPRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQSRKG RQGGYDKEEK  240
AARAYDLAAL KYWGPTTHIN FPLSTYEKEL EEMKNMTRQE FVAMLRRKSS GFSRGASVYR  300
GVTRHHQNGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGTS AVTNFDINRY  360
DVKRICSSST LIGGDLAKRS SKDSAPTSIE DYNSCTSSAL PHPPILSITN DDPSEELVTD  420
TTANSEIPSP RSPKGSVLLG DYSQAYFGSQ GPQCGDGIDE IRTTRVGNLG LVHHQVPMFA  480
LWNESRVEL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460575.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-129AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2R6PTZ10.0A0A2R6PTZ1_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGGorai.012G011800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-127AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]