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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn197641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 268aa MW: 29674.2 Da PI: 8.884 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.7 | 1e-31 | 64 | 119 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++r++eC+kNhAas+Gg+++DGCgEfmps ge+gt +alkCaAC+CHRnFHRre+++ Achn197641 64 GARFRECMKNHAASVGGNVLDGCGEFMPS-GEDGTLEALKCAACNCHRNFHRREPDH 119 579*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 8.5E-30 | 66 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.6E-29 | 66 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-21 | 66 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.645 | 67 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.57E-16 | 187 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 188 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.3E-28 | 189 | 246 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MEVKGQQGSL GYNNNPIFRE TSETLDRHHP LQQNSTRRQN PDQFNGSGGE RVAYKSGGSS 60 FITGARFREC MKNHAASVGG NVLDGCGEFM PSGEDGTLEA LKCAACNCHR NFHRREPDHG 120 SEFALHLPPP LPSPSYRQHQ RLWNPIVSPV KIAFGGGGGT DSSSEDLNFN TVQSNAAGAP 180 LPPPFVLSKK RFRSKFTQEQ KEKMLEYAEK VGWRIPREDD AEMQRFCAEV GVKRQVLKVW 240 MHNNKNSSTK KPPQEGESQG TFRLGCV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-25 | 188 | 247 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028115524.1 | 6e-89 | zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9ZPW7 | 1e-60 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A2R6RMS7 | 0.0 | A0A2R6RMS7_ACTCH; Zinc-finger homeodomain protein | ||||
STRING | EOY14784 | 9e-83 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 5e-60 | homeobox protein 33 |