PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn196641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | Trihelix | ||||||||
Protein Properties | Length: 141aa MW: 16620.7 Da PI: 5.8326 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.5 | 6.1e-17 | 24 | 88 | 16 | 84 |
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 e++ l+++k++k+lW+++ ++mr rgf+rsp++C++kw+nl k+++k k+++++++ + ++ +++ Achn196641 24 ETDALLNTSKSNKHLWDQILARMRGRGFNRSPTRCTDKWRNLLKEFEKAKQSDRSGS-G---KMWCYKE 88 567778999*********************************************983.2...2334555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.179 | 22 | 66 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-4 | 23 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.0E-13 | 24 | 89 | No hit | No description |
SuperFamily | SSF46689 | 5.29E-5 | 28 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MYLPEKPHTI DFYKVEEQQD DDDETDALLN TSKSNKHLWD QILARMRGRG FNRSPTRCTD 60 KWRNLLKEFE KAKQSDRSGS GKMWCYKEIE AFFLEREAPV WGITRAMWLL RSIRICSSPL 120 KDFIFWSSDN EEGGYDITVQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 5e-25 | 26 | 88 | 23 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444419.1 | 9e-28 | PREDICTED: trihelix transcription factor GT-1-like isoform X1 | ||||
Refseq | XP_008444421.1 | 9e-28 | PREDICTED: trihelix transcription factor GT-1-like isoform X2 | ||||
Refseq | XP_008444422.1 | 9e-28 | PREDICTED: trihelix transcription factor GT-1-like isoform X3 | ||||
Refseq | XP_008444423.1 | 9e-28 | PREDICTED: trihelix transcription factor GT-1-like isoform X4 | ||||
Refseq | XP_021892627.1 | 5e-28 | trihelix transcription factor GT-1-like isoform X4 | ||||
Swissprot | Q9FX53 | 1e-25 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A2R6QRA7 | 2e-39 | A0A2R6QRA7_ACTCH; Trihelix transcription factor GT-1 like | ||||
STRING | XP_008444419.1 | 4e-27 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5113 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.3 | 2e-28 | Trihelix family protein |
Publications ? help Back to Top | |||
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