PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn194231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 126aa MW: 14485.7 Da PI: 9.4445 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.5 | 8.1e-30 | 31 | 110 | 50 | 128 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ +e+ewyfF rd+ky++g r+nr++ sgyWka+g+dk++ls+ +ge g+kk Lvf+kgr p+g kt+W+mheyrl Achn194231 31 KTLFGEEEWYFFNLRDRKYPNGVRPNRMAGSGYWKAKGTDKPILSScDGEILGVKKALVFHKGRFPRGAKTNWIMHEYRL 110 3334789**************************************989999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.046 | 1 | 125 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-14 | 19 | 110 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-32 | 29 | 113 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MVNVLCDHYW TLKQNLLGFN AHDIETSNIG KTLFGEEEWY FFNLRDRKYP NGVRPNRMAG 60 SGYWKAKGTD KPILSSCDGE ILGVKKALVF HKGRFPRGAK TNWIMHEYRL PEAMMLTSND 120 IFNLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-36 | 31 | 112 | 68 | 147 | NAC domain-containing protein 19 |
3swm_B | 1e-36 | 31 | 112 | 68 | 147 | NAC domain-containing protein 19 |
3swm_C | 1e-36 | 31 | 112 | 68 | 147 | NAC domain-containing protein 19 |
3swm_D | 1e-36 | 31 | 112 | 68 | 147 | NAC domain-containing protein 19 |
3swp_A | 1e-36 | 31 | 112 | 68 | 147 | NAC domain-containing protein 19 |
3swp_B | 1e-36 | 31 | 112 | 68 | 147 | NAC domain-containing protein 19 |
3swp_C | 1e-36 | 31 | 112 | 68 | 147 | NAC domain-containing protein 19 |
3swp_D | 1e-36 | 31 | 112 | 68 | 147 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028086556.1 | 1e-47 | NAC domain-containing protein 1-like | ||||
Swissprot | A0SPJ6 | 1e-38 | NAMB2_TRITD; NAC transcription factor NAM-B2 | ||||
TrEMBL | A0A1R3HSY9 | 5e-40 | A0A1R3HSY9_9ROSI; No apical meristem (NAM) protein | ||||
TrEMBL | A0A251SQV5 | 1e-39 | A0A251SQV5_HELAN; Putative NAC domain-containing protein | ||||
STRING | EOY07798 | 3e-40 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.3 | 7e-39 | NAC family protein |
Publications ? help Back to Top | |||
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