PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn194231

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 126aa MW: 14485.7 Da PI: 9.4445

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn194231	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	95.5	8.1e-30	31	110	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ +e+ewyfF rd+ky++g r+nr++ sgyWka+g+dk++ls+ +ge g+kk Lvf+kgr p+g kt+W+mheyrl Achn194231 31 KTLFGEEEWYFFNLRDRKYPNGVRPNRMAGSGYWKAKGTDKPILSScDGEILGVKKALVFHKGRFPRGAKTNWIMHEYRL 110 3334789************************************989999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.046	1	125	IPR003441	NAC domain
Pfam	PF02365	3.3E-14	19	110	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-32	29	113	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MVNVLCDHYW TLKQNLLGFN AHDIETSNIG KTLFGEEEWY FFNLRDRKYP NGVRPNRMAG 60 SGYWKAKGTD KPILSSCDGE ILGVKKALVF HKGRFPRGAK TNWIMHEYRL PEAMMLTSND 120 IFNLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-36	31	112	68	147	NAC domain-containing protein 19
3swm_B	1e-36	31	112	68	147	NAC domain-containing protein 19
3swm_C	1e-36	31	112	68	147	NAC domain-containing protein 19
3swm_D	1e-36	31	112	68	147	NAC domain-containing protein 19
3swp_A	1e-36	31	112	68	147	NAC domain-containing protein 19
3swp_B	1e-36	31	112	68	147	NAC domain-containing protein 19
3swp_C	1e-36	31	112	68	147	NAC domain-containing protein 19
3swp_D	1e-36	31	112	68	147	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028086556.1	1e-47	NAC domain-containing protein 1-like
Swissprot	A0SPJ6	1e-38	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	A0A1R3HSY9	5e-40	A0A1R3HSY9_9ROSI; No apical meristem (NAM) protein
TrEMBL	A0A251SQV5	1e-39	A0A251SQV5_HELAN; Putative NAC domain-containing protein
STRING	EOY07798	3e-40	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.3	7e-39	NAC family protein

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]