PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn193931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 878aa MW: 96506.8 Da PI: 8.6995 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.9e-05 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Achn193931 62 FICEVCNKGFQRDQNLQLHRRGH 84 89******************988 PP | |||||||
2 | zf-C2H2 | 11.2 | 0.0011 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Achn193931 139 WKCDKCSKKYAVQSDWKAHSKTC 161 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.71E-7 | 61 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 61 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.026 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.866 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 97 | 104 | 134 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 127 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.71E-7 | 134 | 159 | No hit | No description |
SMART | SM00355 | 150 | 139 | 159 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:1.25.40.10 | 8.7E-15 | 453 | 544 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS50005 | 6.579 | 457 | 490 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 42 | 457 | 490 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50293 | 17.547 | 457 | 685 | IPR013026 | Tetratricopeptide repeat-containing domain |
SuperFamily | SSF48452 | 8.09E-17 | 469 | 640 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS50005 | 7.641 | 491 | 524 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 0.8 | 491 | 524 | IPR019734 | Tetratricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 3.6E-10 | 545 | 660 | IPR011990 | Tetratricopeptide-like helical domain |
SuperFamily | SSF48452 | 2.01E-9 | 586 | 749 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS50005 | 9.824 | 606 | 639 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 0.27 | 606 | 639 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 86 | 652 | 685 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50005 | 6.49 | 652 | 685 | IPR019734 | Tetratricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 1.3E-7 | 663 | 761 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS50005 | 5.635 | 714 | 747 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 12 | 714 | 747 | IPR019734 | Tetratricopeptide repeat |
SuperFamily | SSF46565 | 5.23E-31 | 762 | 871 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 4.5E-32 | 762 | 855 | IPR001623 | DnaJ domain |
SMART | SM00271 | 7.9E-31 | 767 | 826 | IPR001623 | DnaJ domain |
CDD | cd06257 | 7.91E-23 | 768 | 823 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 3.1E-26 | 768 | 831 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 22.579 | 768 | 834 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 6.5E-21 | 770 | 788 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 6.5E-21 | 788 | 803 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 6.5E-21 | 806 | 826 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 811 | 830 | IPR018253 | DnaJ domain, conserved site |
PRINTS | PR00625 | 6.5E-21 | 826 | 845 | IPR001623 | DnaJ domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044794 | Biological Process | positive regulation by host of viral process | ||||
GO:0005788 | Cellular Component | endoplasmic reticulum lumen | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 878 aa Download sequence Send to blast |
MSGDVISSIK GFGQQVDPNP NPNPKPITNT VPKKKRNLPG TPDPDAEVIA LSPKSLMATN 60 RFICEVCNKG FQRDQNLQLH RRGHNLPWKL KQRANKDQIR KKVYICPEKT CVHHDPGRAL 120 GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRAFCD 180 ALAEESARLT SVAAATTTTM NFRNESNLNE GFNNNNNTAQ PNLPAGIAGI SQFGGDFGPS 240 YGGVAAGNSL IGEQQKPGLS LWLDQANSQL NAIGSTSSLP DVLQMPPSNL FNSSTMANFG 300 TLNQSQWVDK INVATSKSAN LYSDNQNHHP NSPVPPMSAT ALLQKAAQMG STRSNPSFTG 360 NNFGLMNSNI NNALSHGRND QSCHLVDHEQ ASEILVGPVN LPARDSLMGS SSLSSLTSAA 420 SSLNSTVPLK LHPGSNRIEH DLTRDFLGMG DGKPGDAAEL FGRVSQSIKV KRYSEALDDL 480 NSAIEADPTL SEAYWHRASI LRQLCRYEDS ENNYKKFLEM IPGNSAAEKE LSQLLQAQSA 540 LETAKSLFDS GDMTKPLHYI DKVVLVFSPA CSRAKLLKVR LLLAAKDYSG AIAETGYLLK 600 EDENNLDALL LRGRAYYYLA DHDVASRHFQ KGLRSDPEHS ELKKAYFGLK NLLKKTKSAE 660 DNVNKGKLRL AVEDYKAALA LDPNHLAHNI HLHLGLCNIL VKLGYLIGSR HLPHDYICQR 720 GEAKLLIEDW EGAVADLKSA AEKSPQDMNI REVLMRAEKS LKLSQRKDWY KILGVSKTAS 780 VSEIKRAYKK LALQWHPDKN VDNREEAEAK FREIAAAYEV LGDEDKRTRY DRGEDIEDMG 840 MNTGGGGFNP FGGGGQQFTF HFEGGFPGGG FPGGFNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2y4t_A | 1e-37 | 441 | 833 | 44 | 450 | DNAJ HOMOLOG SUBFAMILY C MEMBER 3 |
2y4t_B | 1e-37 | 441 | 833 | 44 | 450 | DNAJ HOMOLOG SUBFAMILY C MEMBER 3 |
2y4t_C | 1e-37 | 441 | 833 | 44 | 450 | DNAJ HOMOLOG SUBFAMILY C MEMBER 3 |
2y4u_A | 1e-37 | 441 | 833 | 44 | 450 | DNAJ HOMOLOG SUBFAMILY C MEMBER 3 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 101 | KLKQRANKDQIRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6PKK3 | 0.0 | A0A2R6PKK3_ACTCH; Zinc finger protein like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 4e-89 | C2H2-like zinc finger protein |