PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn193931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 878aa    MW: 96506.8 Da    PI: 8.6995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn193931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-056284123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+k F r  nL+ H r H
  Achn193931 62 FICEVCNKGFQRDQNLQLHRRGH 84
                89******************988 PP
2zf-C2H211.20.0011139161123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H +t+
  Achn193931 139 WKCDKCSKKYAVQSDWKAHSKTC 161
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-76184No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0266284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8666284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM0035597104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-7134159No hitNo description
SMARTSM00355150139159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:1.25.40.108.7E-15453544IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS500056.579457490IPR019734Tetratricopeptide repeat
SMARTSM0002842457490IPR019734Tetratricopeptide repeat
PROSITE profilePS5029317.547457685IPR013026Tetratricopeptide repeat-containing domain
SuperFamilySSF484528.09E-17469640IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS500057.641491524IPR019734Tetratricopeptide repeat
SMARTSM000280.8491524IPR019734Tetratricopeptide repeat
Gene3DG3DSA:1.25.40.103.6E-10545660IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484522.01E-9586749IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS500059.824606639IPR019734Tetratricopeptide repeat
SMARTSM000280.27606639IPR019734Tetratricopeptide repeat
SMARTSM0002886652685IPR019734Tetratricopeptide repeat
PROSITE profilePS500056.49652685IPR019734Tetratricopeptide repeat
Gene3DG3DSA:1.25.40.101.3E-7663761IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS500055.635714747IPR019734Tetratricopeptide repeat
SMARTSM0002812714747IPR019734Tetratricopeptide repeat
SuperFamilySSF465655.23E-31762871IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.5E-32762855IPR001623DnaJ domain
SMARTSM002717.9E-31767826IPR001623DnaJ domain
CDDcd062577.91E-23768823IPR001623DnaJ domain
PfamPF002263.1E-26768831IPR001623DnaJ domain
PROSITE profilePS5007622.579768834IPR001623DnaJ domain
PRINTSPR006256.5E-21770788IPR001623DnaJ domain
PRINTSPR006256.5E-21788803IPR001623DnaJ domain
PRINTSPR006256.5E-21806826IPR001623DnaJ domain
PROSITE patternPS006360811830IPR018253DnaJ domain, conserved site
PRINTSPR006256.5E-21826845IPR001623DnaJ domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044794Biological Processpositive regulation by host of viral process
GO:0005788Cellular Componentendoplasmic reticulum lumen
GO:0005886Cellular Componentplasma membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
MSGDVISSIK GFGQQVDPNP NPNPKPITNT VPKKKRNLPG TPDPDAEVIA LSPKSLMATN  60
RFICEVCNKG FQRDQNLQLH RRGHNLPWKL KQRANKDQIR KKVYICPEKT CVHHDPGRAL  120
GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRAFCD  180
ALAEESARLT SVAAATTTTM NFRNESNLNE GFNNNNNTAQ PNLPAGIAGI SQFGGDFGPS  240
YGGVAAGNSL IGEQQKPGLS LWLDQANSQL NAIGSTSSLP DVLQMPPSNL FNSSTMANFG  300
TLNQSQWVDK INVATSKSAN LYSDNQNHHP NSPVPPMSAT ALLQKAAQMG STRSNPSFTG  360
NNFGLMNSNI NNALSHGRND QSCHLVDHEQ ASEILVGPVN LPARDSLMGS SSLSSLTSAA  420
SSLNSTVPLK LHPGSNRIEH DLTRDFLGMG DGKPGDAAEL FGRVSQSIKV KRYSEALDDL  480
NSAIEADPTL SEAYWHRASI LRQLCRYEDS ENNYKKFLEM IPGNSAAEKE LSQLLQAQSA  540
LETAKSLFDS GDMTKPLHYI DKVVLVFSPA CSRAKLLKVR LLLAAKDYSG AIAETGYLLK  600
EDENNLDALL LRGRAYYYLA DHDVASRHFQ KGLRSDPEHS ELKKAYFGLK NLLKKTKSAE  660
DNVNKGKLRL AVEDYKAALA LDPNHLAHNI HLHLGLCNIL VKLGYLIGSR HLPHDYICQR  720
GEAKLLIEDW EGAVADLKSA AEKSPQDMNI REVLMRAEKS LKLSQRKDWY KILGVSKTAS  780
VSEIKRAYKK LALQWHPDKN VDNREEAEAK FREIAAAYEV LGDEDKRTRY DRGEDIEDMG  840
MNTGGGGFNP FGGGGQQFTF HFEGGFPGGG FPGGFNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2y4t_A1e-3744183344450DNAJ HOMOLOG SUBFAMILY C MEMBER 3
2y4t_B1e-3744183344450DNAJ HOMOLOG SUBFAMILY C MEMBER 3
2y4t_C1e-3744183344450DNAJ HOMOLOG SUBFAMILY C MEMBER 3
2y4u_A1e-3744183344450DNAJ HOMOLOG SUBFAMILY C MEMBER 3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188101KLKQRANKDQIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PKK30.0A0A2R6PKK3_ACTCH; Zinc finger protein like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.14e-89C2H2-like zinc finger protein