PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn192881
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 288aa    MW: 31729.2 Da    PI: 6.7387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn192881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09200243755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++ ++RR+ri +++ +L+el+P+       K++ +++LekA+ Y+k Lq
  Achn192881 200 IAAKNRRERISERLKTLQELVPNG-----SKVDLVTMLEKAIGYVKFLQ 243
                 5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-14190252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12192251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-11193247No hitNo description
PROSITE profilePS5088815.275193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-7200243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTLANDLKPY DSHTGSVQTC TYYSDLFGGS SPAQVSDIFN HHHSPETEKS EGTFAMTRSS  60
SLSSTTPSST NSSAYIYGEA HSVINFTSGN NPLMHSSGSF LSFEQKDQGP KSPNPKVHQQ  120
DDYSIWEDNL IHVSNSSLLQ EFDSVDQSSI QELGTQELAC YNKRPHTGEN MEGVKRQCNS  180
ATRMPNPKST PPSSKDPQSI AAKNRRERIS ERLKTLQELV PNGSKVDLVT MLEKAIGYVK  240
FLQLQVKVLA TDEFWPVHGR KALDLCQVKE AIDAILSSQK HTNSSSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079436.15e-91transcription factor bHLH83-like
TrEMBLA0A2R6RKS10.0A0A2R6RKS1_ACTCH; Transcription factor bHLH086 like
STRINGVIT_14s0006g01470.t012e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.15e-53RHD SIX-LIKE 1