PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn191331
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 515aa    MW: 58128.3 Da    PI: 8.3529
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn191331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.3e-28248306260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgy+WrKYG K+vk+se prsYY+C++++Cp kk +er  +++++++i+Y+g+Hnh+k
  Achn191331 248 DDGYHWRKYGEKQVKESEDPRSYYKCSTPNCPRKKIIERFFSNGHITKIVYKGNHNHPK 306
                 8********************************************************85 PP
2WRKY993e-31396454159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vk +++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnhe
  Achn191331 396 LDDGYRWRKYGQKVVKCNPNPRSYYKCTSQGCPVRKHVERASHDLREVVTTYEGKHNHE 454
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3301.6E-2182164IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549284.3E-1583164IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd122474.25E-3989161No hitNo description
PROSITE profilePS5010213.24391165IPR000504RNA recognition motif domain
SMARTSM003602.0E-1092161IPR000504RNA recognition motif domain
PfamPF000761.2E-1293152IPR000504RNA recognition motif domain
Gene3DG3DSA:2.20.25.802.6E-24242307IPR003657WRKY domain
SuperFamilySSF1182901.57E-22245307IPR003657WRKY domain
SMARTSM007741.3E-27247306IPR003657WRKY domain
PROSITE profilePS5081123.135248307IPR003657WRKY domain
PfamPF031064.8E-21248305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-34381456IPR003657WRKY domain
SuperFamilySSF1182902.22E-27388456IPR003657WRKY domain
PROSITE profilePS5081136.598391456IPR003657WRKY domain
SMARTSM007744.5E-36396455IPR003657WRKY domain
PfamPF031061.2E-23397454IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MCREFYESDK RGVGCSGMSM DWIRTGSINI RIRSDYKLIS IRSESENAER KRRAEEQQSA  60
TTNGTRADIN GGPTASFGKP GAQEATAAPN NILFIQNLPD EATSMMLEML FQQYPGFREV  120
RMVEAKPGIA FVEFEDDVQS SVAMQALQGF KISPQNPMAI TYAKKFYHLQ ILGLFQYRVY  180
RIPKQEQNNY SDFSFQSQTR PPTSTHMNFQ SQVLAEKQPM DFQEPTKTNS QSNNGFQSDY  240
DQCNQTSDDG YHWRKYGEKQ VKESEDPRSY YKCSTPNCPR KKIIERFFSN GHITKIVYKG  300
NHNHPKPQSV RRSSANQIPD ESFFSNGSVP LDLAATPKNS SVTVGDDDFD EDELDSQRWK  360
VEGESKGISS SNSLSLSGGG REPRVVVQTR SEIDNLDDGY RWRKYGQKVV KCNPNPRSYY  420
KCTSQGCPVR KHVERASHDL REVVTTYEGK HNHEVPGPRG GGSHSTTNAA AVANRPRAMS  480
HSSTTTTTNY SMTNAQYVGN VFSKAEERTR DDMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32248456877Probable WRKY transcription factor 4
2lex_A2e-32248456877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051918.11e-116WRKY transcription factor WRKY24-like
TrEMBLA0A2R6PPS30.0A0A2R6PPS3_ACTCH; WRKY transcription factor 26
STRINGEMJ094891e-110(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.21e-72WRKY DNA-binding protein 26