PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn190001

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 300aa MW: 34463.9 Da PI: 8.2383

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn190001	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.1	9e-50	31	156	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+++ s++ + + Achn190001 31 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRTIRSENFRSI 128 79*************************.89***********8778899***************************************** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+grapkg++++W+m+eyrl Achn190001 129 GLKKTLVFYSGRAPKGVRSSWIMNEYRL 156 ************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.444	30	177	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-55	30	177	IPR003441	NAC domain
Pfam	PF02365	1.0E-24	32	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MATIFMAIEA ITMNQDHDNK EIIDPHHDTV MPGFRFHPTE EELIEFYLRR KVEGKRFNVE 60 LITFLDLYRY DPWELPALAA IGEKEWFFYV PRDRKYRNGD RPNRVTTSGY WKATGADRTI 120 RSENFRSIGL KKTLVFYSGR APKGVRSSWI MNEYRLPHHE TERLQKAEIS ICRVYKRPGI 180 EDNLSLPLSV PIRASSSRVA QIDRTRIPTT NDASLDKFQA FGGQCHINEA DKRHETSGIS 240 TSKQANFAQV PNNFSSLVPN NGVDDLHPIV NLLEASTTQL EPYQNHHYFL SQVSALQPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-54	29	177	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-54	29	177	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-54	29	177	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-54	29	177	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-54	32	177	22	168	NAC domain-containing protein 19
3swm_B	4e-54	32	177	22	168	NAC domain-containing protein 19
3swm_C	4e-54	32	177	22	168	NAC domain-containing protein 19
3swm_D	4e-54	32	177	22	168	NAC domain-containing protein 19
3swp_A	4e-54	32	177	22	168	NAC domain-containing protein 19
3swp_B	4e-54	32	177	22	168	NAC domain-containing protein 19
3swp_C	4e-54	32	177	22	168	NAC domain-containing protein 19
3swp_D	4e-54	32	177	22	168	NAC domain-containing protein 19
4dul_A	4e-54	29	177	16	165	NAC domain-containing protein 19
4dul_B	4e-54	29	177	16	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028106561.1	1e-136	NAC domain-containing protein 35-like isoform X2
Swissprot	Q9ZVP8	1e-106	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2R6R199	0.0	A0A2R6R199_ACTCH; NAC domain-containing protein
STRING	cassava4.1_009166m	1e-119	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-109	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]