PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn190001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 34463.9 Da PI: 8.2383 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.1 | 9e-50 | 31 | 156 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+++ s++ + + Achn190001 31 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRTIRSENFRSI 128 79***************************.89***************8778899********************************************* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+grapkg++++W+m+eyrl Achn190001 129 GLKKTLVFYSGRAPKGVRSSWIMNEYRL 156 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.444 | 30 | 177 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-55 | 30 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-24 | 32 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MATIFMAIEA ITMNQDHDNK EIIDPHHDTV MPGFRFHPTE EELIEFYLRR KVEGKRFNVE 60 LITFLDLYRY DPWELPALAA IGEKEWFFYV PRDRKYRNGD RPNRVTTSGY WKATGADRTI 120 RSENFRSIGL KKTLVFYSGR APKGVRSSWI MNEYRLPHHE TERLQKAEIS ICRVYKRPGI 180 EDNLSLPLSV PIRASSSRVA QIDRTRIPTT NDASLDKFQA FGGQCHINEA DKRHETSGIS 240 TSKQANFAQV PNNFSSLVPN NGVDDLHPIV NLLEASTTQL EPYQNHHYFL SQVSALQPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-54 | 29 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-54 | 29 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-54 | 29 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-54 | 29 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-54 | 32 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-54 | 32 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-54 | 32 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-54 | 32 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-54 | 32 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-54 | 32 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-54 | 32 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-54 | 32 | 177 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-54 | 29 | 177 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-54 | 29 | 177 | 16 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028106561.1 | 1e-136 | NAC domain-containing protein 35-like isoform X2 | ||||
Swissprot | Q9ZVP8 | 1e-106 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A2R6R199 | 0.0 | A0A2R6R199_ACTCH; NAC domain-containing protein | ||||
STRING | cassava4.1_009166m | 1e-119 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3888 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-109 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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