PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn187631

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 268aa MW: 30039.5 Da PI: 5.9852

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn187631	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	113.2	1.5e-35	109	193	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r+++++++++g k+plWee+s++mr g++r+pk+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+ Achn187631 109 RWPKTEVEALIKIRTDLDSKYQEGGPKGPLWEEISAAMRNVGYNRNPKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLN 193 8*******************************************************************8.99********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0012	106	168	IPR001005	SANT/Myb domain
CDD	cd12203	3.02E-30	108	173	No hit	No description
PROSITE profile	PS50090	7.41	108	166	IPR017877	Myb-like domain
Pfam	PF13837	1.6E-24	108	195	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-4	108	165	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.41E-5	108	182	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MARMNREHDL LAHERSITAA KDAAVIAFLQ KVSDQQIPNA PQIQIQMQEP SIRHIPPPPP 60 PPPSQSQPQP QPQPQPPQLA IQPAVKTLET PKNDNGGNNT NFLPTSSSRW PKTEVEALIK 120 IRTDLDSKYQ EGGPKGPLWE EISAAMRNVG YNRNPKRCKE KWENINKYFK KVKESNKKRP 180 EDSKTCPYFH QLNALYREKT SRIGNDGASS ALDPMVPIMV QPEQQWPLLQ ENDHNNDHDS 240 GEDEEEEDEA GGYQIVTNKA SSVGTGE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107139	2e-43	AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence.
GenBank	AL606587	2e-43	AL606587.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence.
GenBank	AP014960	2e-43	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	2e-43	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855197	2e-43	CR855197.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0115B09, complete sequence.
GenBank	X68261	2e-43	X68261.1 O.sativa gt-2 gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028117969.1	2e-92	trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-64	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A2R6RNZ5	1e-168	A0A2R6RNZ5_ACTCH; Trihelix transcription factor GT-2 like
STRING	XP_009594163.1	1e-87	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-76	Trihelix family protein