PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn185971

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SBP

Protein Properties

Length: 1062aa MW: 119160 Da PI: 5.9352

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn185971	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	116.5	1.4e-36	130	206	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++Cead+se+k yhrrh+vC +++a+vv+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k Achn185971 130 RCQVPACEADISELKGYHRRHRVCLRCANATVVVLDGQKKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 206 6***********************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.5E-27	127	192	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.633	128	205	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-33	129	208	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.5E-27	131	205	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055070	Biological Process	copper ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1062 aa Download sequence Send to blast
MDPPPTPPLP PPPLSDMENL ISHHDDPLWD WSDFLDFDLD ADADDQFAIS LDSNASPTDQ 60 PPPPTDPVNP SRIRKRDPRM ICSNFLAGRI PCACPELDAK IAEEEEEDGS MIPGKKRVRT 120 ARAVAGTVSR CQVPACEADI SELKGYHRRH RVCLRCANAT VVVLDGQKKR YCQQCGKFHI 180 LSDFDEGKRS CRRKLERHNN RRRRKPSESR VAVEREPHGP VLSDDVACPN ENGKDSMCLS 240 NQITEREPLL ESEEGQISTR CSNPGSENIQ TDSVVSFVAS GEAQIVGEKD ESKYARSSYC 300 EDKSAYSSMC PTGRISFKLY DWNPAEFPRR LRHQIFQWLA SMPVELEGYI RPGCTILTLF 360 IAMPKSMWFK LLEDPVLYIH NLVAAPVKML SGRGTLLVYL DNVIFRAMRV IFICGVDDLP 420 QFMAVTFRSY LWKLTFTFTE LVKTFSHVHS ILMDADGTSV MQVKVEERAP KLHYVHPRCF 480 EAGKPAEFVA CGSNLLQPKF RFLISFAGKY LACDHCVPSL SGDAEGVTTS FDHQLLKIDI 540 PHTEPDLFGP AFIEVENESG LSNFIPILIG NKEICSEMKI MEHRFESSLC LKGSEFMITH 600 SSSDACEVSI QRQTALSQFI LDTAWLLRKP ALEDIEHFLP SSQIGRFNRL LTFLIHNKST 660 CILERVIHYM ENMMDNMNLN SLANGIVDTD MKLLQSNLDH AREILCQRFQ EKVDSAQHSG 720 NLVQQGNCFN RCSQIDTHST LLFDQDMEAM ERGNLVAVAG PNSQDQCVKL PLLNREVVMS 780 VNFTEERPRK SCNRIFTKKY LVSRHLIFVI AAVAVCFGIC EVLLHPQKVG KLATTIRRAT 840 RVEIVLVTAL SVNTCNSDVD LAMLVEECLD STFSCTSLGI VAMAIEQCKN IENGDNNGLE 900 DLENPFIEKK KVVDSEDDES GISGENGSIG MVLLSTAVSI CDSFEFGSRA LITTVGAVLA 960 DKSGRRPLFM ARAYCRTERE TMATTRARVT FRIVLAVLVI VAFFYVFRPL YWKISATVVE 1020 IRQNKQTVTG GISQIVYEAQ KSVGWYQDEF DSGLSDDNRK A*

Sequence ? help Back to Top

Protein Sequence Length: 1062 aa Download sequence Send to blast

MDPPPTPPLP PPPLSDMENL ISHHDDPLWD WSDFLDFDLD ADADDQFAIS LDSNASPTDQ  60
PPPPTDPVNP SRIRKRDPRM ICSNFLAGRI PCACPELDAK IAEEEEEDGS MIPGKKRVRT  120
ARAVAGTVSR CQVPACEADI SELKGYHRRH RVCLRCANAT VVVLDGQKKR YCQQCGKFHI  180
LSDFDEGKRS CRRKLERHNN RRRRKPSESR VAVEREPHGP VLSDDVACPN ENGKDSMCLS  240
NQITEREPLL ESEEGQISTR CSNPGSENIQ TDSVVSFVAS GEAQIVGEKD ESKYARSSYC  300
EDKSAYSSMC PTGRISFKLY DWNPAEFPRR LRHQIFQWLA SMPVELEGYI RPGCTILTLF  360
IAMPKSMWFK LLEDPVLYIH NLVAAPVKML SGRGTLLVYL DNVIFRAMRV IFICGVDDLP  420
QFMAVTFRSY LWKLTFTFTE LVKTFSHVHS ILMDADGTSV MQVKVEERAP KLHYVHPRCF  480
EAGKPAEFVA CGSNLLQPKF RFLISFAGKY LACDHCVPSL SGDAEGVTTS FDHQLLKIDI  540
PHTEPDLFGP AFIEVENESG LSNFIPILIG NKEICSEMKI MEHRFESSLC LKGSEFMITH  600
SSSDACEVSI QRQTALSQFI LDTAWLLRKP ALEDIEHFLP SSQIGRFNRL LTFLIHNKST  660
CILERVIHYM ENMMDNMNLN SLANGIVDTD MKLLQSNLDH AREILCQRFQ EKVDSAQHSG  720
NLVQQGNCFN RCSQIDTHST LLFDQDMEAM ERGNLVAVAG PNSQDQCVKL PLLNREVVMS  780
VNFTEERPRK SCNRIFTKKY LVSRHLIFVI AAVAVCFGIC EVLLHPQKVG KLATTIRRAT  840
RVEIVLVTAL SVNTCNSDVD LAMLVEECLD STFSCTSLGI VAMAIEQCKN IENGDNNGLE  900
DLENPFIEKK KVVDSEDDES GISGENGSIG MVLLSTAVSI CDSFEFGSRA LITTVGAVLA  960
DKSGRRPLFM ARAYCRTERE TMATTRARVT FRIVLAVLVI VAFFYVFRPL YWKISATVVE  1020
IRQNKQTVTG GISQIVYEAQ KSVGWYQDEF DSGLSDDNRK A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	1e-45	126	206	1	81	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	203	RRKLERHNNRRRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00604	PBM	Transfer from AT5G18830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028076085.1	0.0	squamosa promoter-binding-like protein 7 isoform X2
TrEMBL	A0A2R6RVA4	0.0	A0A2R6RVA4_ACTCH; Squamosa promoter-binding-like protein
STRING	VIT_05s0020g02160.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5407	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	squamosa promoter binding protein-like 7