PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn185751

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C3H

Protein Properties

Length: 337aa MW: 34846.2 Da PI: 8.1615

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn185751	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	1	16	12	27
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 +G+Ck+G +CkF+H++ Achn185751 1 MGQCKFGVTCKFHHPQ 16 59************97 PP
2	zf-CCCH	39.3	1.1e-12	160	186	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p Achn185751 160 PGQPECQYYMKTGDCKFGSSCRYHHPP 186 5789*********************97 PP
3	zf-CCCH	31.1	3.9e-10	208	232	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a +G Ck+G++CkF H++ Achn185751 208 APLCMHYAYNGVCKFGPSCKFDHPM 232 68*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00642	7.0E-5	1	16	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.596	1	17	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-6	159	186	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.389	159	187	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.3E-10	161	186	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-6	163	186	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	165	186	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-5	205	232	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.624	205	233	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-7	208	232	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-6	208	235	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	210	230	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGQCKFGVTC KFHHPQPAGI QVSAPLAGPL PASAIYPSMH SPSAPSSQQY GAVAGNWPVA 60 SPALIPGSYL QGAYSPVLLP PGMVPLSGWN PFQLLTHLVQ TPVSSVASPS THSTGGAAPI 120 YGLTQLSPSA PVYTGPYFPL PDSAGPSSSS QKEHAFPERP GQPECQYYMK TGDCKFGSSC 180 RYHHPPEWSA PKMNFALNLM NLPLRPGAPL CMHYAYNGVC KFGPSCKFDH PMGTLSYGPS 240 LSSLADMPVA PYLVGSSTLA PSSSSSDLRP EIVSGSHKDG LSIRISSFMS TSSGSVGSNF 300 SRNGPASHPS QQSGQASSPS TAGSSTSHGS EVCTSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028102410.1	1e-140	zinc finger CCCH domain-containing protein 32-like isoform X2
Swissprot	Q5NAW2	1e-85	C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A2R6RVB0	0.0	A0A2R6RVB0_ACTCH; Zinc finger CCCH domain-containing protein
STRING	PGSC0003DMT400058323	1e-131	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2412	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	2e-79	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Friedrichs G,Fikri M,Guo Y,Temps F Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8. J Phys Chem A, 2008. 112(25): p. 5636-46 [PMID:18512897] Ning H,Gong C,Li Z,Li X Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis. J Phys Chem A, 2015. 119(18): p. 4093-107 [PMID:25868004]