PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn185551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24333.8 Da    PI: 6.7795
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn185551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.9e-18653350
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                ie++s r+ t+ +R  gi KKA EL +LC++ v+++ f+++g+l +++
  Achn185551  6 IESSSLRKSTYKRRMIGIKKKAMELATLCGITVCIVSFGPDGELETWP 53
                9**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-4154IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-17574IPR002100Transcription factor, MADS-box
CDDcd001201.01E-12553No hitNo description
PfamPF003193.0E-15652IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.119656IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVKPLIESSS LRKSTYKRRM IGIKKKAMEL ATLCGITVCI VSFGPDGELE TWPENSAAVR  60
SAVDRYRDCC KLETEAEADE DSLIDEKMAT LERIEREIVD TNKENSRKIL RLMQTMAHDL  120
TSRVDLLKAA FEQSNADGDG IVFDEMINSV YGTHPRFSTT PHILEVYRVL FELIFRSVKF  180
RRIANRSLQS ELVLVRNNNF SESASFRTSR DSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RV841e-154A0A2R6RV84_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.13e-13AGAMOUS-like 51