PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn184451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 361aa    MW: 40703 Da    PI: 5.7594
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn184451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.24e-29134195159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+++e +Y+g+H+++
  Achn184451 134 MDDGYSWRKYGQKDILGAKYPRSYYRCTYRstqNCRATKQVQRSDDDPTIFELVYRGRHTCN 195
                 59**************************99899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28129196IPR003657WRKY domain
PROSITE profilePS5081122.228129192IPR003657WRKY domain
SuperFamilySSF1182907.72E-26133196IPR003657WRKY domain
SMARTSM007748.0E-40134196IPR003657WRKY domain
PfamPF031066.3E-27135194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MQFTMENSLN WEQSTLINEL IQGMELAKQL RAHMNSTSSA GSREVLIQRI LSSYEKALLI  60
LKWNGLGGQP QVSALITGVL ESSVSGDGSP RSEDCDWGFK DQQDQSDVSK KRKVLPTWTD  120
QVRICSENGL EGPMDDGYSW RKYGQKDILG AKYPRSYYRC TYRSTQNCRA TKQVQRSDDD  180
PTIFELVYRG RHTCNQIHHT APPPPSLDKQ EPKQNHHHNN HQQQQSQNML FNFRTSLRVN  240
TEDLDNQEMN PHCTFPSWMR GENQNFAFST LAANNLGSYS PSFVSPATSG TNYFSTPPCR  300
MSSFGLVHNL QHSESDLTEI ISANTSATNS PIVDLDFSID PVELDPNFPF DTLDFSNNST  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-19134194868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115466.11e-162probable WRKY transcription factor 53
TrEMBLA0A2R6QIZ00.0A0A2R6QIZ0_ACTCH; WRKY transcription factor
STRINGPOPTR_0003s13840.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.17e-67WRKY family protein