PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn183781

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 403aa MW: 45656.2 Da PI: 7.976

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn183781	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.2e-52	14	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 + pGfrFhPtdeelv +yLk+kv++++l++ e ik++diyk++PwdLp + ++++ekewyf+s+rd+ky++++r+nr+t +g+Wkatg+d++++s+ + Achn183781 14 MLPGFRFHPTDEELVGFYLKRKVQQRPLSI-ELIKQLDIYKYDPWDLPtELATTGEKEWYFYSPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSegG 111 579*************************.89***********556667899**********************************9777 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkk+Lvfykgra kg ktdW+mhe+rl Achn183781 112 SKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 143 777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-57	8	174	IPR003441	NAC domain
PROSITE profile	PS51005	57.154	14	174	IPR003441	NAC domain
Pfam	PF02365	3.3E-25	16	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MDERSDTNKT EEVMLPGFRF HPTDEELVGF YLKRKVQQRP LSIELIKQLD IYKYDPWDLP 60 TELATTGEKE WYFYSPRDRK YRNSTRPNRV TGAGFWKATG TDRPIYSSEG GSKCIGLKKS 120 LVFYKGRAAK GIKTDWMMHE FRLPPLTDSA LHKRFIDKNI PANDSWAICR IFKKTNSTTQ 180 RAISHSWVYP LPETTTTSQY ETLSQGPNSN FTSENMTLMT TKSTSPFQFS SNSNDLQQSC 240 MTSTTFSPLY VPSYKPINHI PSKPPPQVSF SNGDLPTSYT TIDSSSMFPN MSHNIFGDFG 300 KLASESLDFN VLQRQGGNLS FVLPQEMQEK AIHGEDMGLI RDLNGAHFDD QWGNMNMRSI 360 GNSFGLPLGV TEAWKSNFLW DSSSPSPSDQ MSTSYSTNKC YT*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MDERSDTNKT EEVMLPGFRF HPTDEELVGF YLKRKVQQRP LSIELIKQLD IYKYDPWDLP  60
TELATTGEKE WYFYSPRDRK YRNSTRPNRV TGAGFWKATG TDRPIYSSEG GSKCIGLKKS  120
LVFYKGRAAK GIKTDWMMHE FRLPPLTDSA LHKRFIDKNI PANDSWAICR IFKKTNSTTQ  180
RAISHSWVYP LPETTTTSQY ETLSQGPNSN FTSENMTLMT TKSTSPFQFS SNSNDLQQSC  240
MTSTTFSPLY VPSYKPINHI PSKPPPQVSF SNGDLPTSYT TIDSSSMFPN MSHNIFGDFG  300
KLASESLDFN VLQRQGGNLS FVLPQEMQEK AIHGEDMGLI RDLNGAHFDD QWGNMNMRSI  360
GNSFGLPLGV TEAWKSNFLW DSSSPSPSDQ MSTSYSTNKC YT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-52	10	180	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-52	10	180	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-52	10	180	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-52	10	180	13	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-52	10	180	16	174	NAC domain-containing protein 19
3swm_B	6e-52	10	180	16	174	NAC domain-containing protein 19
3swm_C	6e-52	10	180	16	174	NAC domain-containing protein 19
3swm_D	6e-52	10	180	16	174	NAC domain-containing protein 19
3swp_A	6e-52	10	180	16	174	NAC domain-containing protein 19
3swp_B	6e-52	10	180	16	174	NAC domain-containing protein 19
3swp_C	6e-52	10	180	16	174	NAC domain-containing protein 19
3swp_D	6e-52	10	180	16	174	NAC domain-containing protein 19
4dul_A	5e-52	10	180	13	171	NAC domain-containing protein 19
4dul_B	5e-52	10	180	13	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028087474.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	1e-106	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2R6RFD0	0.0	A0A2R6RFD0_ACTCH; Protein FEZ like
STRING	VIT_01s0026g02360.t01	1e-178	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-108	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]