PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn183721
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Whirly
Protein Properties Length: 649aa    MW: 70115.8 Da    PI: 8.0493
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn183721genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1652e-51962081113
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                 s+yk+kaal+v+ + p+f+ l++g++k++++G +ll++a+a+++r+ydW++kq+f+ls+te++++++l++ esceffhdp++++s+eGkvrk+lkvePl
  Achn183721  96 SIYKGKAALTVDVRPPEFTPLETGAFKMTKEGYVLLQFAPAAGVRQYDWGRKQVFSLSVTEMGTIMSLGPSESCEFFHDPFKGKSEEGKVRKVLKVEPL 194
                 79************************************************************************************************* PP

      Whirly 100 pdGsGlfvnlsvtn 113
                 pdG+G+f+nls+ +
  Achn183721 195 PDGTGHFFNLSMAQ 208
                 **********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.108.9E-5485209IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.9E-4589206IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.1E-4997209IPR013742Plant transcription factor
SuperFamilySSF546314.3E-16245328No hitNo description
PROSITE profilePS513718.735256322IPR000644CBS domain
Gene3DG3DSA:3.10.580.102.7E-9261321No hitNo description
SMARTSM001164.4261317IPR000644CBS domain
CDDcd022059.86E-4261319No hitNo description
SuperFamilySSF546314.3E-16393468No hitNo description
Gene3DG3DSA:3.10.580.102.7E-9405469No hitNo description
PROSITE profilePS513716.376414480IPR000644CBS domain
SMARTSM0011659421470IPR000644CBS domain
Gene3DG3DSA:3.10.580.101.0E-23494627No hitNo description
PfamPF005711.5E-7494546IPR000644CBS domain
PROSITE profilePS5137112.74494554IPR000644CBS domain
SuperFamilySSF546315.73E-28495636No hitNo description
CDDcd046423.92E-35497625No hitNo description
SMARTSM001161.1E-9498547IPR000644CBS domain
PROSITE profilePS5137110.425574636IPR000644CBS domain
SMARTSM001163.1E-8579627IPR000644CBS domain
PfamPF005713.4E-10580624IPR000644CBS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MLNLFLSSSP PGLTIPNPKP FCVLHSFSSL DAIAAIRLKP TPSSLSSTKT PRPQTLSIKC  60
RRSDYFEQQN QRFAPKSPTP VNDAAGSPPR IYVGHSIYKG KAALTVDVRP PEFTPLETGA  120
FKMTKEGYVL LQFAPAAGVR QYDWGRKQVF SLSVTEMGTI MSLGPSESCE FFHDPFKGKS  180
EEGKVRKVLK VEPLPDGTGH FFNLSMAQPQ TLKESSKLAS YDTYFETIQS RKKLPNSLQE  240
SLTAAFARIP VSSFPEVPGG KVIEILADTS IGDAVKILSE SNILSAPVRN PDAKNSMDWR  300
ERYLGIIDYS AIVLWVLESA EIAAAALTAS SATAAGVGAG AVGALGAVAL GATGPVAVVG  360
LTVAAVGAAV AGGVAADRGM GKDAPTAADK LGEEFYKVLL QEEPFKSTTV RSILKSYRWA  420
PFLPVAMDSS MLSVLLLLSK YKLRNVPVIE PGQPLVKNFI TQSAIVHGLE QCKGRDWFES  480
ISAESISDMG LPFMSSNEVV SIQSDELILE AFKRMKDNHI GGLPVVEGPK RKIVGNVSIR  540
DIRYLLLQPK LFSSFRQLTV MDFMNSIAAT SHDCGKVITP ITCKPEATLS TVIQSLASKS  600
VHRIYVVGVD EEVVGVITLR DVISCFISEP PNHFDNYFGF AVQEMLNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koo_A4e-66842062124Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_B4e-66842062124Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_C4e-66842062124Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_D4e-66842062124Single-stranded DNA-binding protein WHY1, chloroplastic
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028110865.10.0SNF1-related protein kinase regulatory subunit gamma-1-like
SwissprotQ9CAR30.0KINGL_ARATH; SNF1-related protein kinase regulatory subunit gamma-1-like
TrEMBLA0A2R6RFA20.0A0A2R6RFA2_ACTCH; SNF1-related protein kinase regulatory subunit gamma-1-like
STRINGXP_010242383.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA777222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-73ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Jeong BC,Yoo KS,Jung KW,Shin JS,Song HK
    Purification, crystallization and preliminary X-ray diffraction analysis of a cystathionine beta-synthase domain-containing protein, CDCP2, from Arabidopsis thaliana.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2008. 64(Pt 9): p. 825-7
    [PMID:18765915]
  2. Kushwaha HR,Singh AK,Sopory SK,Singla-Pareek SL,Pareek A
    Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation.
    BMC Genomics, 2009. 10: p. 200
    [PMID:19400948]