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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn182951 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 275aa MW: 29868.3 Da PI: 9.7188 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 109.5 | 1.8e-34 | 49 | 105 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
v+Y+eClkNhAaslGghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRr+ +
Achn182951 49 VVVYRECLKNHAASLGGHAVDGCGEFMPSPAATpADPTSLKCAACGCHRNFHRRDDD 105
589***************************9999********************976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD125774 | 2.0E-17 | 32 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Pfam | PF04770 | 6.1E-29 | 50 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 27.225 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 2.5E-30 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Gene3D | G3DSA:1.10.10.60 | 9.7E-29 | 162 | 231 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.66E-18 | 163 | 231 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01565 | 9.0E-25 | 170 | 226 | IPR006455 | Homeodomain, ZF-HD class |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 275 aa Download sequence Send to blast |
MDPTTTAAAT NSLHTENETP LANKSLSFTN GALKKHAPYH HHSQPLAVVV VYRECLKNHA 60 ASLGGHAVDG CGEFMPSPAA TPADPTSLKC AACGCHRNFH RRDDDPSPAA AFFLNFRRPP 120 PPSRRRNSPL SSPSLSPPPQ PQPQPSYHHP NAVVTPATPT PAKAENSSGR KRFRTKFSRD 180 QKEKMHSFSE KLGWKMQRSD EGLIEEFCSE IGVGKGVLKV WMHNNKHTFG KRDINYAAAA 240 ATTTTTNNHH QIHHHEGNNG VHLHVSADGS PSSA* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wh7_A | 3e-20 | 171 | 228 | 18 | 75 | ZF-HD homeobox family protein |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028116046.1 | 2e-90 | zinc-finger homeodomain protein 11-like | ||||
| TrEMBL | A0A314KKG8 | 4e-83 | A0A314KKG8_NICAT; Zinc-finger homeodomain protein 9 | ||||
| STRING | XP_009620302.1 | 1e-81 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1088 | 24 | 85 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69600.1 | 7e-44 | zinc finger homeodomain 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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