PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn182921

Common Name

DOF2

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Dof

Protein Properties

Length: 437aa MW: 47569 Da PI: 7.9206

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn182921	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.3e-38	122	181	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC st+tkfCy+nny+++qPryfCk+C+ryWt+GG++rnvPvG+grrk+k+s Achn182921 122 PDKILPCPRCSSTETKFCYFNNYNVNQPRYFCKNCQRYWTAGGSMRNVPVGSGRRKHKSS 181 7899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	120	179	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-31	124	180	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.286	126	180	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	128	164	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MSLLRDPAIK LFGKTISVQP NKEASSFTAT IPPPHVAAAA ADLNLVSSTT SSSSSSHGDL 60 ICISVDDQED NQKPSEYVKY LEISSGYPKT PSVNNEPTSP KVSKNDEQSE TSITQETTPK 120 KPDKILPCPR CSSTETKFCY FNNYNVNQPR YFCKNCQRYW TAGGSMRNVP VGSGRRKHKS 180 SPASHYGHIM VSESLHNGNA TVLAFGSDLP LCESIASALS LAEESRNCFQ KQKVSVSCGD 240 DNSSRSSVTV SNSTDHQRGD SALQETVVTN FQTLAPQVQC FAGPPWACPP GFSPSAFPVT 300 FYPAPAYWGC TLPGPYWGTC TSPEPALCSS PNSQNLGKHS RDGDMIRPSN SEKDSERSRV 360 WIPKTLRIDD PSEAAKSSIW STLGIKNEKH NSTNGRSMFK AFESKVDEKN HRSERPLVLQ 420 ANPAALARSL NFHECV*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MSLLRDPAIK LFGKTISVQP NKEASSFTAT IPPPHVAAAA ADLNLVSSTT SSSSSSHGDL  60
ICISVDDQED NQKPSEYVKY LEISSGYPKT PSVNNEPTSP KVSKNDEQSE TSITQETTPK  120
KPDKILPCPR CSSTETKFCY FNNYNVNQPR YFCKNCQRYW TAGGSMRNVP VGSGRRKHKS  180
SPASHYGHIM VSESLHNGNA TVLAFGSDLP LCESIASALS LAEESRNCFQ KQKVSVSCGD  240
DNSSRSSVTV SNSTDHQRGD SALQETVVTN FQTLAPQVQC FAGPPWACPP GFSPSAFPVT  300
FYPAPAYWGC TLPGPYWGTC TSPEPALCSS PNSQNLGKHS RDGDMIRPSN SEKDSERSRV  360
WIPKTLRIDD PSEAAKSSIW STLGIKNEKH NSTNGRSMFK AFESKVDEKN HRSERPLVLQ  420
ANPAALARSL NFHECV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX067534	0.0	JX067534.1 Actinidia chinensis clone 324501 Dof zinc finger protein (DOF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028073357.1	1e-161	cyclic dof factor 1-like
TrEMBL	A0A2R6RFG5	0.0	A0A2R6RFG5_ACTCH; Cyclic dof factor like
STRING	XP_009360328.1	1e-137	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-74	cycling DOF factor 2