PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn182291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 408aa    MW: 45903 Da    PI: 7.8156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn182291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10226271454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+e+ErrRR+riN  +++Lr l+P        K++Ka+ L +++  +k+L
  Achn182291 226 DHSEAERRRRERINAHLNTLRGLVPCT-----VKMDKATLLAEVITQLKQL 271
                 59************************8.....7************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.70.101.5E-2818152No hitNo description
SuperFamilySSF540015.97E-2838153No hitNo description
SMARTSM008488.9E-254299IPR013201Cathepsin propeptide inhibitor domain (I29)
PfamPF082462.6E-154299IPR013201Cathepsin propeptide inhibitor domain (I29)
PROSITE profilePS5088814.659222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8226271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11226278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-11227280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.1E-4308355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAMACSNHFP FMFLALFFVF EVLLASRALS RPFDEEFFLT RHQQWVAHHG RNYKDEEEKY  60
TRFKIFKDNV ERIEAFNAGV DRGYKLCVNQ FADLTNEEFR ASRNGYKRKE AKFEANSQLS  120
TSFRYTNVSV VPFIMDWRKQ GAVTPVKDQG QCDHQEDVDF LSLISLQTTP IRLSLPNGSG  180
DLRRGSMSAS QSLVLDGERS EIVKGPVIVG KRSGVSEEKA MAALKDHSEA ERRRRERINA  240
HLNTLRGLVP CTVKMDKATL LAEVITQLKQ LNKTATEYSK GLTIPMDDDE VIVEPHYEGD  300
GIFSLTASFC CDYSPQLISE LRQALKTLPL NIVNAEISTL GGRVKNVFVF TSYKDTNSYN  360
AEACQVLVNS VHQSLTSVLD KVSAAADYTL PNKRRRISFI DSSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4qrg_A2e-144315267173Papain
4qrg_B2e-144315267173Papain
4qrv_A2e-144315267173Papain
4qrv_B2e-144315267173Papain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235ERRRRE
2392396KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092033.14e-93transcription factor bHLH30-like
RefseqXP_028098584.14e-93putative transcription factor bHLH107
TrEMBLA0A2R6Q6Y31e-137A0A2R6Q6Y3_ACTCH; Transcription factor bHLH30 like
STRINGVIT_14s0068g01580.t014e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.19e-30basic helix-loop-helix 32