PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn181381
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 325aa    MW: 36345.4 Da    PI: 8.5538
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn181381genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.77e-34832231128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWka 85 
                 lp+G++F+Ptd+e++ e+L++kv+++ ++++        +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + +W++
  Achn181381  83 LPAGVKFDPTDQEIL-EHLEAKVSRDAHKIHPlidefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdtvggETRWHK 179
                 799***********9.99******9995553333333322333336**********.555666777******************744345555778*** PP

         NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 tgk+++v++ +g+ +g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Achn181381 180 TGKTRPVIA-NGAFKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 223
                 *********.999***********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.201.7E-4872No hitNo description
SuperFamilySSF1019417.32E-3878242IPR003441NAC domain
PROSITE profilePS5100534.0983242IPR003441NAC domain
PfamPF023652.1E-1584223IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAILSLSLII LFLSLFFICK KRTVESEELI PTKLCACPYS LMDIDAATDG FNPRRVIGQG  60
WLGTVYMAVL PRGEGGIQDL PGLPAGVKFD PTDQEILEHL EAKVSRDAHK IHPLIDEFIP  120
TLEGENGICY THPEKLPGVS KDGQIRHFFH RPSKAYTTGT RKRRKVHTDT VGGETRWHKT  180
GKTRPVIANG AFKGFKKILV LYTNYGRQKK PEKTNWVMHQ YHLGDNEEER DGELVVSKVF  240
YQTQPRQCGS SGKDLLDQKP RGQSGQASDY VDPCYNFPLI SYEIGGQNRE SPPHLIPNLD  300
VQGDGSSFID LHTNASKGKT LERK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088449.11e-143NAC domain-containing protein 73-like
SwissprotF4HY611e-110NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A2R6RAP30.0A0A2R6RAP3_ACTCH; NAC domain-containing protein (Fragment)
STRINGEOY281521e-135(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-112NAC domain containing protein 10