PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn181381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 36345.4 Da PI: 8.5538 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.7 | 7e-34 | 83 | 223 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWka 85 lp+G++F+Ptd+e++ e+L++kv+++ ++++ +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + +W++ Achn181381 83 LPAGVKFDPTDQEIL-EHLEAKVSRDAHKIHPlidefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdtvggETRWHK 179 799***********9.99******9995553333333322333336**********.555666777******************744345555778*** PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tgk+++v++ +g+ +g kk+Lv+y gr++k+ekt+Wvmh+y+l Achn181381 180 TGKTRPVIA-NGAFKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 223 *********.999***********6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.200.20 | 1.7E-4 | 8 | 72 | No hit | No description |
SuperFamily | SSF101941 | 7.32E-38 | 78 | 242 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.09 | 83 | 242 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-15 | 84 | 223 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAILSLSLII LFLSLFFICK KRTVESEELI PTKLCACPYS LMDIDAATDG FNPRRVIGQG 60 WLGTVYMAVL PRGEGGIQDL PGLPAGVKFD PTDQEILEHL EAKVSRDAHK IHPLIDEFIP 120 TLEGENGICY THPEKLPGVS KDGQIRHFFH RPSKAYTTGT RKRRKVHTDT VGGETRWHKT 180 GKTRPVIANG AFKGFKKILV LYTNYGRQKK PEKTNWVMHQ YHLGDNEEER DGELVVSKVF 240 YQTQPRQCGS SGKDLLDQKP RGQSGQASDY VDPCYNFPLI SYEIGGQNRE SPPHLIPNLD 300 VQGDGSSFID LHTNASKGKT LERK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028088449.1 | 1e-143 | NAC domain-containing protein 73-like | ||||
Swissprot | F4HY61 | 1e-110 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | A0A2R6RAP3 | 0.0 | A0A2R6RAP3_ACTCH; NAC domain-containing protein (Fragment) | ||||
STRING | EOY28152 | 1e-135 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 1e-112 | NAC domain containing protein 10 |