PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn180221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HSF | ||||||||
Protein Properties | Length: 469aa MW: 52791.9 Da PI: 5.0164 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.3 | 3.4e-35 | 14 | 104 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d++++e++sws+++nsfvv+++ efa+ +Lp yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+ll++i+ Achn180221 14 FLLKTYEMVDDSSTDEIVSWSSSKNSFVVWNPPEFARILLPAYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDQKHLLKNIH 101 9****************************************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Achn180221 102 RRK 104 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.5E-59 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.36E-35 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.3E-38 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.2E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.1E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MEGSPAGGGG PAPFLLKTYE MVDDSSTDEI VSWSSSKNSF VVWNPPEFAR ILLPAYFKHN 60 NFSSFIRQLN TYGFRKIDPE RWEFANEEFV KDQKHLLKNI HRRKPIHSHS QPQGSAADPE 120 RAAFEEEIDK LSREKTTLEN NLLRFKQQSA AKPQLEDWTQ RVTAIELRQE SLLSFLEKVV 180 QNQNFVEQLS RKLESMDFSA YNKKRRLSQV DYSQQVPENS FVDNQWSSRP DFGNIFPQDF 240 SNKLRLELSP SVSDINFVSH STQSSNENGG SPQRRLSEGY PKDAQRAGGL SFASETLELS 300 DTGTSFTFNM DSALSHKAGG SENPRLLPLQ QNLTSNEEVD GHLSCHLNLT LASSSLQVDK 360 SQYSAKVPQQ SHEIGISPEL RSNANDKEDD DGTLSSSQEA PVKNQGPATS QIRVNDVFWE 420 QFLTERPGIS DAEEASSSFR ENTYDDQEDR QSGRAVSRNG KNTEHLTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-22 | 5 | 103 | 15 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-22 | 5 | 103 | 15 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-22 | 5 | 103 | 15 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028127145.1 | 0.0 | heat stress transcription factor A-5 | ||||
Swissprot | Q94BZ5 | 1e-162 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A2R6RXQ3 | 0.0 | A0A2R6RXQ3_ACTCH; Heat stress transcription factor A-5 like | ||||
STRING | cassava4.1_006311m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9461 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-165 | HSF family protein |
Publications ? help Back to Top | |||
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