PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn179941
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 322aa    MW: 37923.6 Da    PI: 8.2151
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn179941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.83.4e-2452133186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++ e+++Li++r e+e+++  +k++k+lWe vs++mre g++r++ qCk+kw+nl +ryk  ++++      + +++p+f++l+
  Achn179941  52 QWSQLETRDLIAIRAELERDFTVAKRNKTLWEVVSARMRELGYRRTADQCKCKWKNLVNRYKGKETSDLV----DGRQFPFFEELH 133
                 7*************************************************************98877765....45689***9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.56145109IPR017877Myb-like domain
CDDcd122033.69E-2551116No hitNo description
PfamPF138374.7E-2251135No hitNo description
Gene3DG3DSA:1.10.10.609.1E-452111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNFSGGSGRG GRENDFLHMM MKPLPLPLNP AAIGGGDDGD GEFPKRDERV PQWSQLETRD  60
LIAIRAELER DFTVAKRNKT LWEVVSARMR ELGYRRTADQ CKCKWKNLVN RYKGKETSDL  120
VDGRQFPFFE ELHAIFTERE KNMQRMLLES EAGSTQANKK VKRISGDQSS EELSYYEDED  180
EVESDGQRVT SSSNPRKRKD DREKVEKEKR LRIPRQPSTG NVNNSGNSIG SLQEMLHEFL  240
QQQQRIEMMW KESIERHAYE RQMLELKWRQ SMEKLERERL MAEQAWRERE EQRRIREESR  300
AEKRDALLTT LFNRLINENH P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028064442.11e-143trihelix transcription factor GT-3b-like
RefseqXP_028064443.11e-143trihelix transcription factor GT-3b-like
RefseqXP_028064444.11e-143trihelix transcription factor GT-3b-like
TrEMBLA0A2R6QPB90.0A0A2R6QPB9_ACTCH; Trihelix transcription factor GT-3b like
STRINGGLYMA01G35370.21e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101331923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-30Trihelix family protein