PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn179621

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 632aa MW: 71196.9 Da PI: 6.9004

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn179621	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.7	3.1e-28	38	132	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++es+s +++ ++l+ Achn179621 38 RWTRQEILVLIQGKRVAENRGRRGRtvgmafgagQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREESESFWAMRNDLR 132 8********************97788888888************************************************99999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.7E-12	38	128	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-4	38	103	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	38	104	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence Send to blast
MALERLSLGS TPVDAVPNGG DDRKTTGDDG HRAPRLPRWT RQEILVLIQG KRVAENRGRR 60 GRTVGMAFGA GQVEPKWASV SSYCKRHGVN RGPVQCRKRW SNLAGDYKKI KEWESQIREE 120 SESFWAMRND LRRERKLPGF FDREVYDILD GGTIPSVTPT GLALALAPSK EEAVEEVETE 180 TVFDSGRSAA AEDGLFSDFE QSAQEEAGGE SHGKDSPPAK KVRTTTVPDS IPISAHPYPQ 240 KLMEQHWLVS QLGQIHGKRQ ASDPETGATS EEGCKRRRFG ADRDEETNTL QCQLIKVLEK 300 NGRMVCAQLE SQNTNSQLDR EQRKDHANSL VAVLNKLADA LGRIADKLIA IIGSVETINH 360 GKLSAFIYLI VMPCNSIRYQ EIWPPNPDTI QHLIDAYRHQ SNEDRIKRSL NLSNFFEDRN 420 QKMEHALVKL RQRNNEATYS TWDDRYNDLS KEQLRDLEGM LDEKLQSAKA RVAFMKGTHN 480 AFTSQNHSCV GLFGTVSTQL EPQPISLLNQ NEVDIPIHYH FNQIHQGLQL DAKAMEYSMK 540 MISMNNNYYT ELGGVSNSTF LGNPLVCYDP MMPGMLENRV VNNPSSPMGY YNPSIQTMSP 600 YLQYLKMESA NASSSVHTSH MDKYSEARDF R*

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence Send to blast

MALERLSLGS TPVDAVPNGG DDRKTTGDDG HRAPRLPRWT RQEILVLIQG KRVAENRGRR  60
GRTVGMAFGA GQVEPKWASV SSYCKRHGVN RGPVQCRKRW SNLAGDYKKI KEWESQIREE  120
SESFWAMRND LRRERKLPGF FDREVYDILD GGTIPSVTPT GLALALAPSK EEAVEEVETE  180
TVFDSGRSAA AEDGLFSDFE QSAQEEAGGE SHGKDSPPAK KVRTTTVPDS IPISAHPYPQ  240
KLMEQHWLVS QLGQIHGKRQ ASDPETGATS EEGCKRRRFG ADRDEETNTL QCQLIKVLEK  300
NGRMVCAQLE SQNTNSQLDR EQRKDHANSL VAVLNKLADA LGRIADKLIA IIGSVETINH  360
GKLSAFIYLI VMPCNSIRYQ EIWPPNPDTI QHLIDAYRHQ SNEDRIKRSL NLSNFFEDRN  420
QKMEHALVKL RQRNNEATYS TWDDRYNDLS KEQLRDLEGM LDEKLQSAKA RVAFMKGTHN  480
AFTSQNHSCV GLFGTVSTQL EPQPISLLNQ NEVDIPIHYH FNQIHQGLQL DAKAMEYSMK  540
MISMNNNYYT ELGGVSNSTF LGNPLVCYDP MMPGMLENRV VNNPSSPMGY YNPSIQTMSP  600
YLQYLKMESA NASSSVHTSH MDKYSEARDF R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002269943.2	1e-150	PREDICTED: trihelix transcription factor ASR3 isoform X1
Swissprot	Q8VZ20	1e-116	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2R6REL0	0.0	A0A2R6REL0_ACTCH; Trihelix transcription factor
STRING	VIT_01s0150g00050.t01	1e-150	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-115	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]