PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn177891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 782aa MW: 86199.1 Da PI: 5.8084 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00013 | 577 | 614 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i ++++eLr+l+P+ K+s + L ++v+++ Lq Achn177891 577 RQQIQDRIAELRKLIPNG-----VKMSIDSLLAQTVKHMLFLQ 614 89**************96.....69999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.5E-15 | 61 | 178 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 0.00365 | 553 | 614 | No hit | No description |
PROSITE profile | PS50888 | 10.976 | 564 | 613 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-4 | 577 | 627 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-5 | 577 | 634 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010078 | Biological Process | maintenance of root meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010479 | Biological Process | stele development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 782 aa Download sequence Send to blast |
MRVCLSRFSV SEGPVEGGGL VLMLAHYHTS NRHALVFERL LTMEDAYYEE QMGGVIDNML 60 LQVHLLGNGV VGQAAFTKRH QWMFSDARCG AQNPVDCVKN QDIFQKNQLV KPDICMFVPT 120 YLKVAFHLQD DSEIHDQFSS GIKTIVLISV EPYGVVQFGS TQKIPERMEF VDQTKTLFRE 180 IENSDAFILP ENMPSSSNSE TSGLFASLIS TGNSILGNLK PVHGDSSRNY MATTCSSKDL 240 PQLSPFTSDS GWMNSSHLGN QLQSHKSSAW FPEPLVQCIT YSDHSALPSP CISTWSSGQS 300 TLTSIDRQLP AQTRLVGSQD VSPTNTNSLT SCRNEVHNFQ DSTFTSVHST RGLADLETRS 360 TRASTFQDLF DVNHPSNSVQ SSITNTFGSD GDEIFLNDSS IGNDFFDSLG ADFQCVLAED 420 FFDDIRVPVV RGDQLDFSAD TSECISGQHV STMIAPHDTL FSKLGLEQFL GGIAGSSNSI 480 ASSSFEYELS SASKRKMGSC SASLPCFDGN MNSLHNVHNL EPRKEGIPKS EAGSWIGNGY 540 SMACGTYVAS QPKRTEKSSK VGKKRARPGS RPKPKDRQQI QDRIAELRKL IPNGVKMSID 600 SLLAQTVKHM LFLQSVTNHA EKIKHAEERK ETETVMRDDS SSSGHNARRA CEVGETMVDP 660 VDVKDLSLPG QMLIQMLCEE KGFFLEIVDI IQGFGLTILK GVMEVRENKI WACFVVEAEG 720 NRHVMKQEIY LSLHRLLYQK ATSEINLTDH LANVLNGGTA LLNNYHQPLV PLPISLAETL 780 D* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028099161.1 | 0.0 | transcription factor bHLH157-like | ||||
TrEMBL | A0A2R6PHQ6 | 0.0 | A0A2R6PHQ6_ACTCH; Transcription factor LHW like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 3e-43 | conserved peptide upstream open reading frame 7 |