PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn177891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 782aa    MW: 86199.1 Da    PI: 5.8084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn177891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000135776141355
                 HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 R++i ++++eLr+l+P+       K+s  + L ++v+++  Lq
  Achn177891 577 RQQIQDRIAELRKLIPNG-----VKMSIDSLLAQTVKHMLFLQ 614
                 89**************96.....69999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-1561178IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00365553614No hitNo description
PROSITE profilePS5088810.976564613IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-4577627IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-5577634IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MRVCLSRFSV SEGPVEGGGL VLMLAHYHTS NRHALVFERL LTMEDAYYEE QMGGVIDNML  60
LQVHLLGNGV VGQAAFTKRH QWMFSDARCG AQNPVDCVKN QDIFQKNQLV KPDICMFVPT  120
YLKVAFHLQD DSEIHDQFSS GIKTIVLISV EPYGVVQFGS TQKIPERMEF VDQTKTLFRE  180
IENSDAFILP ENMPSSSNSE TSGLFASLIS TGNSILGNLK PVHGDSSRNY MATTCSSKDL  240
PQLSPFTSDS GWMNSSHLGN QLQSHKSSAW FPEPLVQCIT YSDHSALPSP CISTWSSGQS  300
TLTSIDRQLP AQTRLVGSQD VSPTNTNSLT SCRNEVHNFQ DSTFTSVHST RGLADLETRS  360
TRASTFQDLF DVNHPSNSVQ SSITNTFGSD GDEIFLNDSS IGNDFFDSLG ADFQCVLAED  420
FFDDIRVPVV RGDQLDFSAD TSECISGQHV STMIAPHDTL FSKLGLEQFL GGIAGSSNSI  480
ASSSFEYELS SASKRKMGSC SASLPCFDGN MNSLHNVHNL EPRKEGIPKS EAGSWIGNGY  540
SMACGTYVAS QPKRTEKSSK VGKKRARPGS RPKPKDRQQI QDRIAELRKL IPNGVKMSID  600
SLLAQTVKHM LFLQSVTNHA EKIKHAEERK ETETVMRDDS SSSGHNARRA CEVGETMVDP  660
VDVKDLSLPG QMLIQMLCEE KGFFLEIVDI IQGFGLTILK GVMEVRENKI WACFVVEAEG  720
NRHVMKQEIY LSLHRLLYQK ATSEINLTDH LANVLNGGTA LLNNYHQPLV PLPISLAETL  780
D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099161.10.0transcription factor bHLH157-like
TrEMBLA0A2R6PHQ60.0A0A2R6PHQ6_ACTCH; Transcription factor LHW like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.13e-43conserved peptide upstream open reading frame 7