PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn177031

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 394aa MW: 43441 Da PI: 6.8076

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn177031	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.4e-06	284	322	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Achn177031 284 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 322 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.576	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-11	283	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.43E-6	283	327	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-9	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MADEFQNWWA TGSSSSSSSS SAALTSVVSF GWPAEMVDIK ASSSMDLTLS SQAMDWNHQT 60 LLRGGKAESS FRSVIQEDLN SSTKFQSEAG IGSLSQEQWR EKIYSGGSED SSVSEYKQIN 120 RGFLMDQPQF GSQISSTSFQ MDPTTFQGLL SSENQQQQSH FENQPMNNYQ YQASYGVNTG 180 ELLPSSWSKF PQFTRTSPPK QPPHSPLQFS NNAPFWNATS APMSEVRSSF FPASLQTQLP 240 PPTFDEKTKN TSEVVVKKSS SSSSEASNKR PRNETPSPLP AFKVRKEKMG DRITALQQLV 300 SPFGKTDTAS VLSEAIEYIK FLHGQVSVLS NPYMKSGASM QHQQTSNKSK EPEGPKQDLR 360 SRGLCLVPVS STFPVTHETT VDFWNPTFGG TFR*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MADEFQNWWA TGSSSSSSSS SAALTSVVSF GWPAEMVDIK ASSSMDLTLS SQAMDWNHQT  60
LLRGGKAESS FRSVIQEDLN SSTKFQSEAG IGSLSQEQWR EKIYSGGSED SSVSEYKQIN  120
RGFLMDQPQF GSQISSTSFQ MDPTTFQGLL SSENQQQQSH FENQPMNNYQ YQASYGVNTG  180
ELLPSSWSKF PQFTRTSPPK QPPHSPLQFS NNAPFWNATS APMSEVRSSF FPASLQTQLP  240
PPTFDEKTKN TSEVVVKKSS SSSSEASNKR PRNETPSPLP AFKVRKEKMG DRITALQQLV  300
SPFGKTDTAS VLSEAIEYIK FLHGQVSVLS NPYMKSGASM QHQQTSNKSK EPEGPKQDLR  360
SRGLCLVPVS STFPVTHETT VDFWNPTFGG TFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021287909.1	1e-165	transcription factor bHLH123 isoform X1
Swissprot	Q8GXT3	1e-76	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2R6QDR8	0.0	A0A2R6QDR8_ACTCH; Transcription factor bHLH123 like
STRING	EOY12661	1e-164	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	7e-71	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]