PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn176021

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C3H

Protein Properties

Length: 312aa MW: 32498 Da PI: 6.3557

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn176021	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	184	205	1	22
--S---SGGGGTS--TTTTT-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCk 22 ykte+Cr + + +C+yG++C+ Achn176021 184 YKTEICRSWEDSSHCRYGSKCQ 205 9********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.2E-8	181	205	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.46E-5	182	205	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.042	183	205	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.6E-5	184	205	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEGPYGNNSS RVSKLKAFNG NVSPINSQRD NHQFFIGGGR LHHPPKSPTL DPYSENLDSA 60 LIRYLRSGSP ASPVAGDTFK APVDGAMIGH QFLSGNSSGS GGSVGYLSSW GSSATVSPLS 120 AVENLETPPA RSPPVFKTPV KVEEDVLVMD GILVESVSGG RMRLSALSDS GGSSSSSSGS 180 KSFYKTEICR SWEDSSHCRY GSKCQVTTSA ISPTGPSVTA TILATTQTIS LSSIKAENSS 240 ESGSKSTSSG NVTVASTDWC PLDDGIEVSL PFSASTNEIP SREAVNAYIN SVLYGPSRGK 300 RLPVFAEICP E*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028089505.1	7e-99	zinc finger CCCH domain-containing protein 58-like isoform X2
TrEMBL	A0A2R6Q6E1	0.0	A0A2R6Q6E1_ACTCH; Zinc finger protein like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7765	18	24