PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn173641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 131aa MW: 14985.5 Da PI: 4.7746 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.5 | 1.6e-11 | 42 | 124 | 1 | 66 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkakl 66 k+Y++Y+++ GF +r+++s+k +r++ +t+ fvC keg ++ +k +k++r+ ++ ++gCka+l Achn173641 42 KYYEDYGRQNGFWIRTRTSYKGqNRSNDVTSVLFVCAKEGMYVPKAEKdgvegnddrseddkvlPNKRKRSCSTAKCGCKAHL 124 69***************99997567888*************999999999************99899999999********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-9 | 42 | 125 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MEDSFEFDDF EVEDLHTSNN DVEKLEAPSS GMSFETIEEA RKYYEDYGRQ NGFWIRTRTS 60 YKGQNRSNDV TSVLFVCAKE GMYVPKAEKD GVEGNDDRSE DDKVLPNKRK RSCSTAKCGC 120 KAHLWNKCDK * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289266.1 | 2e-30 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2R6R5G6 | 1e-49 | A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | XP_004289266.1 | 9e-30 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-08 | FAR1-related sequence 7 |