PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn172891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 667aa    MW: 72671.6 Da    PI: 6.31
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn172891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-07265285526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ GtC+ Gd C +aHg
  Achn172891 265 PCPEFRK-GTCRQGDACEYAHG 285
                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.0E-1218145IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.89E-1127142IPR020683Ankyrin repeat-containing domain
SMARTSM002480.366191IPR002110Ankyrin repeat
PROSITE profilePS5029713.3161136IPR020683Ankyrin repeat-containing domain
PfamPF136378.1E-662120No hitNo description
CDDcd002041.93E-1063136No hitNo description
PROSITE profilePS500889.40496131IPR002110Ankyrin repeat
SMARTSM002480.496128IPR002110Ankyrin repeat
SMARTSM003565.4E-5260286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4264287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784265287IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4265285IPR000571Zinc finger, CCCH-type
SMARTSM0035616295318IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.991295319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MEGVEFVKKD GVSGRFSDLL ELSASDDLTG FKIAVEEEGY DVDKSSYWYG KRIGSKKMGF  60
EERTPLLIAA TFGSKQVLSY ILETGLVDVN RACGSDRATA IHCAVAGGSV SSLDVIKLLL  120
GACADTNSVD ANGNRPNDLL VQSLNSSFNY RRKMLAGMLN SSSNYGEECG LADHPIEHVE  180
EQEDQQILTP SASKDGVEKK EYPVDLSLPD IKNGIYGTDE FRMYTFKVMP CSRAYSHDWT  240
ECPFVHPGEN ARRRDPRKYH YSCVPCPEFR KGTCRQGDAC EYAHGIFESW LHPAQYRTRL  300
CKDESGCTRR VCFFAHKPEE LRPLYASTGS AVPSPRSYSN GASSLDMMSI SSLALGSPSL  360
VMQSTSTPPM TPLGASLPGS MWQNHPNIVP PTLQLPGSRL KTSMSAKEMD FDPELLGIES  420
HCLRKQQLMD EMSNLSSPTS WNNAFATTAA FGATSVDLHK LGVVKPSNLD DIFASQVQSP  480
SGIQIRQNVN QQLRSSYPTS LSSSPGRAAL SFGIDPSGAA AAAVLNSREA GFAKKSQSFI  540
NRSTANHLSG IASSATALPS TLADWGSPDG KLDWGIQKEE LHKLRKSASF GFRSNSSNSA  600
TPVPSMLASG DEPNVSWVQS LVKDAPTVKS RHFNFEQQQF HLNSGGSEML PLWLEQLYVE  660
QEQIVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016084.20.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2R6PPT80.0A0A2R6PPT8_ACTCH; Zinc finger CCCH domain-containing protein
STRINGEOY337030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein