PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn171301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 198aa MW: 21480.7 Da PI: 9.6958 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42 | 1.6e-13 | 16 | 62 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ K +Ka+ L ++++ +++L Achn171301 16 KSHSEAERRRRKRINGHLATLRTLLPHT-----DKTDKASLLAEVIQLLRDL 62 79*************************7.....6*************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 13 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-13 | 15 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.31E-11 | 16 | 64 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.2E-13 | 16 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-11 | 16 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-10 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 1.49E-7 | 107 | 174 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.8E-8 | 108 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGSRFTPEEK AAAASKSHSE AERRRRKRIN GHLATLRTLL PHTDKTDKAS LLAEVIQLLR 60 DLKNTTAKLT DIGGDSESNQ YHMFPTEIDE LKLCHIEGDP QGPLIKATIC CDDRPELISE 120 VTQVVRAVAG TVVRAEMATV GGRTKSVLWV QVKSSGGGEA LGMLRRALKV VVEDRAALWS 180 GPGLGLPENK RARLSHV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027078146.1 | 1e-70 | transcription factor bHLH30-like | ||||
TrEMBL | A0A2R6R640 | 1e-141 | A0A2R6R640_ACTCH; Transcription factor bHLH30 like | ||||
STRING | XP_009605433.1 | 3e-58 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7283 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-25 | bHLH family protein |