PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn170671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 278aa MW: 30251.4 Da PI: 7.5341 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1.1e-05 | 112 | 131 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+Fsr n++ H+ Achn170671 112 FSCSVCNKTFSRYNNMQMHM 131 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.00011 | 197 | 219 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk+F + + ++H +++ Achn170671 197 FGCQKCGKPFAVRGDWRTHEKNC 219 56*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.38E-6 | 108 | 134 | No hit | No description |
Pfam | PF12874 | 2.1E-4 | 112 | 131 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-7 | 112 | 131 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.596 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.071 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 160 | 192 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 8.81E-6 | 180 | 217 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 183 | 217 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 120 | 197 | 217 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MHTSSFTNIS TSESASLEAD EEDEDSITLL SLGPPGHPFS THPNYPHSSL SLNPQNCQNP 60 SGSSQDGVTV ALHIGPPNRE AGSSNPNSMG GPAQGQYWIP TPSQILVGPT QFSCSVCNKT 120 FSRYNNMQMH MWGHGSQYRK GPDSLRGTRS ASSILRLPCY CCAEGCKNNI EHPRSRPLKD 180 FRTLQTHYKR KHGAKPFGCQ KCGKPFAVRG DWRTHEKNCG KLWFCICGSD FKHKRSLKDH 240 VRAFGEGHAP HSEDLYNDVG DGDGDGDGDG DGGNLGF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010647907.1 | 1e-144 | PREDICTED: zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 1e-119 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A2R6PB68 | 0.0 | A0A2R6PB68_ACTCH; Zinc finger protein | ||||
STRING | VIT_01s0011g03100.t01 | 1e-143 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-119 | C2H2-like zinc finger protein |