PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn170671
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 278aa    MW: 30251.4 Da    PI: 7.5341
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn170671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05112131120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C+ C+k+Fsr  n++ H+
  Achn170671 112 FSCSVCNKTFSRYNNMQMHM 131
                 89*****************9 PP
2zf-C2H214.50.00011197219123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C++Cgk+F  + + ++H +++
  Achn170671 197 FGCQKCGKPFAVRGDWRTHEKNC 219
                 56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.38E-6108134No hitNo description
PfamPF128742.1E-4112131No hitNo description
Gene3DG3DSA:3.30.160.609.0E-7112131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.596112139IPR007087Zinc finger, C2H2
SMARTSM003550.071112134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SMARTSM00355220160192IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.81E-6180217No hitNo description
Gene3DG3DSA:3.30.160.603.2E-5183217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355120197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MHTSSFTNIS TSESASLEAD EEDEDSITLL SLGPPGHPFS THPNYPHSSL SLNPQNCQNP  60
SGSSQDGVTV ALHIGPPNRE AGSSNPNSMG GPAQGQYWIP TPSQILVGPT QFSCSVCNKT  120
FSRYNNMQMH MWGHGSQYRK GPDSLRGTRS ASSILRLPCY CCAEGCKNNI EHPRSRPLKD  180
FRTLQTHYKR KHGAKPFGCQ KCGKPFAVRG DWRTHEKNCG KLWFCICGSD FKHKRSLKDH  240
VRAFGEGHAP HSEDLYNDVG DGDGDGDGDG DGGNLGF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647907.11e-144PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-119ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2R6PB680.0A0A2R6PB68_ACTCH; Zinc finger protein
STRINGVIT_01s0011g03100.t011e-143(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-119C2H2-like zinc finger protein