PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn169841
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 598aa    MW: 67593.7 Da    PI: 6.258
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn169841genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.22.2e-2839133186
    trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rWt+qe+l+Li+++r  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++es+s +++ ++l+
  Achn169841  39 RWTRQEILVLIQGKRVAENRVRRGRtvgmafgagQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREESESFWAMRNDLR 133
                 8**********************97788888888**************************************************99999999986 PP
2SRF-TF55.38.2e-18297338243
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                  i+n+  r+vtf kR++g+ KK +EL +LCd++v+vii++s+
  Achn169841 297 LISNEKARYVTFQKRKKGLKKKTYELKTLCDVDVCVIIYGSQ 338
                 59**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.439105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-439104IPR009057Homeodomain-like
PfamPF138372.6E-1239129No hitNo description
SuperFamilySSF554557.85E-20287375IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-15288351IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.558288337IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-10290310IPR002100Transcription factor, MADS-box
PfamPF003192.2E-18298337IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-10310325IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-10325346IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MALEGLSLGP APVHAVPNGG DDDHKTTGDD GIRAPRLPRW TRQEILVLIQ GKRVAENRVR  60
RGRTVGMAFG AGQVEPKWAS VSSYCKRHGV NRGPVQCRKR WSNLAGDYKK IKEWESQIRE  120
ESESFWAMRN DLRRERKLPG FFDREVYDIL DGGTMPSVTQ TGLALALAPS TEAAAEEVEA  180
EAVFDSGRSA AAEDGLFSDF EQSAQEEAGV DSPDKDSPPA KEVHTTNVPD SIPISGPMHG  240
KRQASEPETG TTSEEGRKRR RFGADRDEET NTLQCQLIEV LEKNGRMMGR AKQRMELISN  300
EKARYVTFQK RKKGLKKKTY ELKTLCDVDV CVIIYGSQMD DHPSEAEIWP PNPDTIQHLI  360
DAYRHQSNED RIKRSLNLSN FFEDRNQKME HALVKLRQRN NEATYSTWDD RYNDLSKEQL  420
RDLEGMLEEK LQSAKARVAF MKGTHNALTT QNHSCEGLFG TPSTQLEPQP ISLLNQNEVE  480
IPIHYPFNQI HQGFQLDAKA MEYSMKMFSM NNNYYTELGG VSNSTFLGNP LVCYDPMMPG  540
MLENRVDNNP SSPMGYYNPS IQTMSPYLQY LKMESASASS NVHTSHMDKY SEARDFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256260RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6REK40.0A0A2R6REK4_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-83Trihelix family protein