PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn169681

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 246aa MW: 27927.5 Da PI: 9.407

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn169681	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.8	4.4e-49	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeelvv+yLk+k+ + +l++ ++i+e+d++k++PwdLp + +e yfFs+ + ky++g+r nrat sgyWkatg dk++++ +++ Achn169681 14 LPPGFRFHPTDEELVVQYLKRKAFSCPLPA-SIIPEFDVCKSDPWDLPG---DSAQERYFFSTWEAKYPNGNRLNRATGSGYWKATGIDKQIVTCrSNQ 108 79**************************.89***********3...456799*****************************99864778 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktL fy+g+ p+g++tdW+mheyrl Achn169681 109 VVGMKKTLFFYRGKPPRGSRTDWIMHEYRL 138 8*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-59	10	164	IPR003441	NAC domain
PROSITE profile	PS51005	56.362	14	164	IPR003441	NAC domain
Pfam	PF02365	7.0E-25	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKAFSCP LPASIIPEFD VCKSDPWDLP 60 GDSAQERYFF STWEAKYPNG NRLNRATGSG YWKATGIDKQ IVTCRSNQVV GMKKTLFFYR 120 GKPPRGSRTD WIMHEYRLVD GETAKNNSTQ TTMENWVLCR IFLKKRSTKN DQEITQLNNC 180 ETVKTALKNG PVFNDFLAKN RTDLNLTPAS SSSGSSVVTQ VSFHESDDHE ESSSCNSFSS 240 FKRKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	12	169	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	12	169	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	12	169	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	12	169	15	170	NO APICAL MERISTEM PROTEIN
4dul_A	2e-52	12	169	15	170	NAC domain-containing protein 19
4dul_B	2e-52	12	169	15	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF319053	0.0	KF319053.1 Actinidia chinensis NAC protein 4 (NAC4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028076724.1	1e-140	NAC domain-containing protein 83-like
Swissprot	Q9FY93	1e-100	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2R6RF17	0.0	A0A2R6RF17_ACTCH; NAC domain-containing protein
STRING	cassava4.1_014491m	1e-131	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	5e-97	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]