PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn169341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | YABBY | ||||||||
Protein Properties | Length: 120aa MW: 13714.2 Da PI: 6.5262 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 92.3 | 1.2e-28 | 31 | 94 | 98 | 159 |
YABBY 98 sekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 s + +++ed+ev + v+rPPekrqr+Psayn fikeei+r ka+ P+++h+eafsaaakn Achn169341 31 SLDIssDDEEDDEVLVNHIVNRPPEKRQRAPSAYNNFIKEEIRRFKAKYPNMTHKEAFSAAAKN 94 2222325566777777777********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.4E-26 | 22 | 94 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.62E-6 | 50 | 93 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MSFMINRQPK QEVSPELEAD AEKGLDKRSP SLDISSDDEE DDEVLVNHIV NRPPEKRQRA 60 PSAYNNFIKE EIRRFKAKYP NMTHKEAFSA AAKNVHVEGN GFSERKSSRH SIWAQTPFE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028085469.1 | 1e-48 | axial regulator YABBY 4-like isoform X2 | ||||
Swissprot | Q9LDT3 | 3e-28 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2R6RER2 | 1e-64 | A0A2R6RER2_ACTCH; Axial regulator YABBY like | ||||
STRING | evm.model.supercontig_69.72 | 1e-35 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-26 | YABBY family protein |
Publications ? help Back to Top | |||
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