PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn168321
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 567aa    MW: 63051.7 Da    PI: 6.7071
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn168321genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06276298426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 +lC  f+ tG C +G++C+F H+
  Achn168321 276 RLCFKFLSTGSCARGEKCHFQHD 298
                 78999999**************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.44E-296185No hitNo description
SMARTSM003560.013272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131272300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6276298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5276298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835304332IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011306331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5308333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4309333IPR000571Zinc finger, CCCH-type
PfamPF046772.3E-36347465IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.103.8E-4350433IPR011146HIT-like domain
SuperFamilySSF541971.93E-6356454IPR011146HIT-like domain
PfamPF046765.8E-16478563IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MCQGEVNKST GPFDALLCVG QFFPDSSDHL GEFMDYIEGR SEIPLPTYFI GDYGASAMKV  60
LSAATKDPAN LGFKMDGLSV SYLSGRHSTS SQQFGTYSQD DIDALRAFAE EPGIVDFGVT  120
TGAVTSDLPL GIFDSYGSSS AISELVTEIK PRYHVAGTKG VFYAREPYAN TEAVHVTRFL  180
GLGAVGNKDR QGAYAADKGS GRHTFLAFEL KASTMSASEI GMKPTNTTLC PFTSVDKAAH  240
TDGAAKRPID KAPESQYWRY DVSQKRQRHG DTEGNRLCFK FLSTGSCARG EKCHFQHDGD  300
AREQCSRGVC FDFLNKGKCE RGPDCNFKHS LQDEDKSFPN RRRGSGNTNT NTDRSSDCWF  360
CLSSFSLESH LITSIGEHYY CALAKGPLVE DHVLIIPIEH TPTTLSSSSE CEPELIRFQN  420
SLKKYFKNQE KEVVFFEWFS TRGTHANLQV IPIPSSRASV VKDIFNLAAQ KLGFKFTEIK  480
KGRKSLQMKF DRKCSLFYVE LPGDTILYHS VEENETFPAQ FGREVLAGLL NMADRADWKN  540
CKLGKEEETK MAENFKNRYQ EYNPNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U1e-11358563675887CWF19-like protein 2
6id1_U1e-11358563675887CWF19-like protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083889.10.0zinc finger CCCH domain-containing protein 64
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A2R6QUU60.0A0A2R6QUU6_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_006451479.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA942244