PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn167071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | AP2 | ||||||||
Protein Properties | Length: 366aa MW: 39169.7 Da PI: 5.775 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.3 | 4.3e-09 | 144 | 187 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr d + k+++lg f+ta Aa a+++a+ k++g Achn167071 144 SQYRGVTFYRRTGR------D------CgKQVYLGGFDTAHAAACAYDRAAIKFRG 187 78************......5......56************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.154 | 135 | 195 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-11 | 136 | 195 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-10 | 144 | 196 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-20 | 145 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-5 | 206 | 229 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MWDLNDSPDQ TRDEESEDEN GKRVGSVSKS SSSSSVVEEV SDDDGGERGG RKRSSRIFEG 60 SVASEIESPA VTQQFFPSEV GTTSGVGGDV GGGGGGVSDF PRAHWVGVSF CHSAALSGGG 120 GVGKRVELTQ PPKKSRRGPR SRSSQYRGVT FYRRTGRDCG KQVYLGGFDT AHAAACAYDR 180 AAIKFRGIEA DINFSLEDYE EDLKQVEAAR AYDKAAIKCN GKEAATNFDP KSYEDELNSA 240 ECSGNATGQN LELSLGGSAS NQNSQELGRT VQNVVTDQRR TGMPLEVDWC DWGFRPKIQY 300 PSSSNGGRIS ANGRDLSLST INPQWQLSSP QLFATAAASS GFPQQITRPQ NLTHKNGFHS 360 LVKPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ113365 | 1e-48 | HQ113365.1 Actinidia deliciosa APETALA2 variant AP2delta mRNA, complete cds, alternatively spliced. | |||
GenBank | JN247401 | 1e-48 | JN247401.1 Actinidia deliciosa cultivar Hayward APETALA2 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079274.1 | 3e-76 | floral homeotic protein APETALA 2 isoform X3 | ||||
Swissprot | P47927 | 4e-55 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2R6R5I2 | 1e-139 | A0A2R6R5I2_ACTCH; Floral homeotic protein like | ||||
STRING | VIT_07s0031g00220.t01 | 2e-73 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17321 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 5e-43 | AP2 family protein |