PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn167011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C3H | ||||||||
Protein Properties | Length: 166aa MW: 18461.4 Da PI: 9.9984 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.6e-12 | 3 | 27 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k e Cr+f+r G C+yG+rCkF H+ Achn167011 3 PKKETCRNFQR-GSCQYGERCKFLHV 27 699********.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 16.812 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-6 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.3E-10 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-8 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MPPKKETCRN FQRGSCQYGE RCKFLHVTQQ QPKANVFGFG AQTSSQFQRS NSQHQKPNPF 60 GFGVQGSSQP RGATDFGSKQ NQFKPFENKW TRFSPINTVG SQASRQPDNL PATANHNSPC 120 DIIGDISYEE LRAAAYDDAK RGLSLQSIVR DTAYHISVQS SKWTL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028060199.1 | 5e-69 | zinc finger CCCH domain-containing protein 46-like | ||||
Swissprot | Q9FWS3 | 1e-26 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | A0A2R6S1C4 | 2e-97 | A0A2R6S1C4_ACTCH; Zinc finger CCCH domain-containing protein | ||||
STRING | PGSC0003DMT400007502 | 5e-62 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9439 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 6e-29 | C3H family protein |