PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn166931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 199aa MW: 21106.2 Da PI: 8.3854 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 86.8 | 2.2e-27 | 8 | 62 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 +Y+eCl+NhAaslG++a+DGCgEf+ + + g +l+CaACgCHRnFHR+ + Achn166931 8 DVYRECLRNHAASLGSYATDGCGEFTLDVTLPpGGGGGLQCAACGCHRNFHRKVT 62 58*************************98888899*****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.2E-23 | 9 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-22 | 10 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.059 | 10 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-12 | 10 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-26 | 90 | 167 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.64E-13 | 92 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.9E-26 | 99 | 165 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEGDHTNDVY RECLRNHAAS LGSYATDGCG EFTLDVTLPP GGGGGLQCAA CGCHRNFHRK 60 VTGAGRARGS SGGLTTVDYG GGSGMFVEEE SAAASGGGKK RFRTKFTEEQ REKMLEFAEK 120 IGWKMAQRRR DVGSGEDGGD EIERFCRGVG VSRQVFKVWM HNHKNNSSSS TSSSATTTTT 180 NTTTATPNAA SSLTTFTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-19 | 100 | 170 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022845031.1 | 5e-71 | zinc-finger homeodomain protein 11-like | ||||
Swissprot | A2XLF4 | 8e-42 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 8e-42 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A2R6PUU0 | 1e-143 | A0A2R6PUU0_ACTCH; Zinc-finger homeodomain protein | ||||
STRING | POPTR_0012s03770.1 | 1e-67 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11865 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 5e-32 | homeobox protein 24 |