PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn165991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 151aa MW: 17280 Da PI: 10.4146 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29.3 | 2.9e-09 | 3 | 59 | 36 | 90 |
FAR1 36 skegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++g++++ + + ++++r +r+ r+gC a++ ++ ++ +k++vt + +eHnH+++ Achn165991 3 NRQGQTAKAHLErSDRKRVPRPFMRVGCLATFSIRYDRkLKKYVVTYFAKEHNHPFV 59 6777777766654678888*****************99899*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-7 | 3 | 59 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MINRQGQTAK AHLERSDRKR VPRPFMRVGC LATFSIRYDR KLKKYVVTYF AKEHNHPFVA 60 SQCMPCHRLQ KSVKDPDKAH DQMANPDVGV KTSQMHDAGQ GTFNLNMDQN CKHRAISEVS 120 LESVNTKLIR PGKFKEARCK GMEKVHKDIE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 42 | RKRVPRPFMRVGCLATFSIRYDRKLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028092438.1 | 3e-22 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_028095631.1 | 9e-22 | protein FAR1-RELATED SEQUENCE 5-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-09 | FAR1 family protein |