PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn165321
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 281aa    MW: 30641.4 Da    PI: 8.6083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn165321genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-054769223
                EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                +C++Cg+ F  +  L+ H  + H
  Achn165321 47 TCHKCGEQFGKWFALEAHHLSnH 69
                7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002804869IPR007087Zinc finger, C2H2
SuperFamilySSF563994.17E-2271279No hitNo description
Gene3DG3DSA:3.90.228.105.6E-881272IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKREGNGFGG SVISGVANGL GNGNGHGVFS NPKASLETDV NGPLSVTCHK CGEQFGKWFA  60
LEAHHLSNHA VTELVEGDSS RKIVEIICRT SWLKSENHCG RIERVLKVHN MQKTLARFEE  120
YRETVKIKAN KLPKKHPRCL ADGNELLRFY GTTMACSLGM NGSSSLCASE KCCVCQIIRN  180
GFNAKKELKG GIGVFTTSTS GRAFEDIEIF EEHPSMKKAL IVCRVIAGRV HRPLENIQEM  240
AGQSGFDSLA GKVGLYSNIE ELYLLNPKAL LPCFVVICKP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124616.11e-167uncharacterized protein LOC114321634
TrEMBLA0A2R6QWZ90.0A0A2R6QWZ9_ACTCH; Zinc finger protein like
STRINGVIT_19s0014g05000.t011e-165(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-135C2H2 family protein