PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn164231

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 723aa MW: 84291.7 Da PI: 7.4234

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn164231	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.5	4.5e-18	42	149	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 k+Y++Y+++ GF + ++ s+k ++++ +t+ fvC keg ++ kk +k++++ ++ ++gC+a+l++k++k + kwevt + Achn164231 42 KYYEDYGRQNGFWIHTRISSKGqNQSNDVTSVLFVCAKEGMYVRKAKKdgvegndereeddkvlPKKRKKSCSTAKCGCNAHLRIKRDKwSLKWEVTIF 140 69********8766655554245666********9999888889*******9988888999999********************* PP FAR1 82 eleHnHela 90 + HnH+l+ Achn164231 141 DDTHNHQLV 149 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-15	42	149	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-31	266	359	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
MEESFGLGDF EVEDLQTTNN DVERLEAPSS GMSFETIEEA WKYYEDYGRQ NGFWIHTRIS 60 SKGQNQSNDV TSVLFVCAKE GMYVRKAKKD GVEGNDEREE DDKVLPKKRK KSCSTAKCGC 120 NAHLRIKRDK WSLKWEVTIF DDTHNHQLVT PSKRMKMKSN RHMPKAIKDL TEAFHRENLQ 180 ISKVASIFGG EYIGFDNRDC YNHLRNVRHR ELDGGDAQSV LTYFKNKQAQ NPHFFYAIQC 240 DESARAVNFF WVDSRSCMAY HYFGDVVTFD TTYRTNKYEM PFAPFTGVNY HMHSIQFGCT 300 LLQDETEVTF LGLFETWLEA MGGRAPTSII TNQDLAMKGA IAKVFPNTRH RLCIWHIKNK 360 FVEKLSQVYY KRSKFKVEVK KCIWKTYTKE DFEERWMALI KEYELETNEW LQQLYDIRES 420 WVPVYNRGTF FAGMNTTGRS EGVNSFFDGF VTSTINLKEF VVKYEQALKK IVKRESDENF 480 ELEHKFRIVN EGEFLLKYAA KIYTRNVFNK FKDEISEVFR YKVEDVGNTN RFQSFVVKSK 540 VCEFEKFIVT LDSQTYEGRC EYQKFEFVGI LCTHILKVFV RLDIDAIPDH FILPRWRQKA 600 NKFRIIDSEE LVHDDGKEES EALRLSHMCQ ESTKLACLAA PSNEAYTIYI ETMNGLFEKL 660 IKVTSYVPPM DVCLEKDNVH TIEPSQILIS DPNISQTKGR KKDAMGKFSH GKGPNISQSH 720 FA*

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

MEESFGLGDF EVEDLQTTNN DVERLEAPSS GMSFETIEEA WKYYEDYGRQ NGFWIHTRIS  60
SKGQNQSNDV TSVLFVCAKE GMYVRKAKKD GVEGNDEREE DDKVLPKKRK KSCSTAKCGC  120
NAHLRIKRDK WSLKWEVTIF DDTHNHQLVT PSKRMKMKSN RHMPKAIKDL TEAFHRENLQ  180
ISKVASIFGG EYIGFDNRDC YNHLRNVRHR ELDGGDAQSV LTYFKNKQAQ NPHFFYAIQC  240
DESARAVNFF WVDSRSCMAY HYFGDVVTFD TTYRTNKYEM PFAPFTGVNY HMHSIQFGCT  300
LLQDETEVTF LGLFETWLEA MGGRAPTSII TNQDLAMKGA IAKVFPNTRH RLCIWHIKNK  360
FVEKLSQVYY KRSKFKVEVK KCIWKTYTKE DFEERWMALI KEYELETNEW LQQLYDIRES  420
WVPVYNRGTF FAGMNTTGRS EGVNSFFDGF VTSTINLKEF VVKYEQALKK IVKRESDENF  480
ELEHKFRIVN EGEFLLKYAA KIYTRNVFNK FKDEISEVFR YKVEDVGNTN RFQSFVVKSK  540
VCEFEKFIVT LDSQTYEGRC EYQKFEFVGI LCTHILKVFV RLDIDAIPDH FILPRWRQKA  600
NKFRIIDSEE LVHDDGKEES EALRLSHMCQ ESTKLACLAA PSNEAYTIYI ETMNGLFEKL  660
IKVTSYVPPM DVCLEKDNVH TIEPSQILIS DPNISQTKGR KKDAMGKFSH GKGPNISQSH  720
FA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	111	PKKRKKS
2	106	110	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008219733.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251QDD0	0.0	A0A251QDD0_PRUPE; Uncharacterized protein
STRING	XP_008219733.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-130	FAR1-related sequence 5