PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn164231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 723aa MW: 84291.7 Da PI: 7.4234 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.5 | 4.5e-18 | 42 | 149 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 k+Y++Y+++ GF + ++ s+k ++++ +t+ fvC keg ++ kk +k++++ ++ ++gC+a+l++k++k + kwevt + Achn164231 42 KYYEDYGRQNGFWIHTRISSKGqNQSNDVTSVLFVCAKEGMYVRKAKKdgvegndereeddkvlPKKRKKSCSTAKCGCNAHLRIKRDKwSLKWEVTIF 140 69**********8766655554245666************9999888889***********9988888999999************************* PP FAR1 82 eleHnHela 90 + HnH+l+ Achn164231 141 DDTHNHQLV 149 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-15 | 42 | 149 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.8E-31 | 266 | 359 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence Send to blast |
MEESFGLGDF EVEDLQTTNN DVERLEAPSS GMSFETIEEA WKYYEDYGRQ NGFWIHTRIS 60 SKGQNQSNDV TSVLFVCAKE GMYVRKAKKD GVEGNDEREE DDKVLPKKRK KSCSTAKCGC 120 NAHLRIKRDK WSLKWEVTIF DDTHNHQLVT PSKRMKMKSN RHMPKAIKDL TEAFHRENLQ 180 ISKVASIFGG EYIGFDNRDC YNHLRNVRHR ELDGGDAQSV LTYFKNKQAQ NPHFFYAIQC 240 DESARAVNFF WVDSRSCMAY HYFGDVVTFD TTYRTNKYEM PFAPFTGVNY HMHSIQFGCT 300 LLQDETEVTF LGLFETWLEA MGGRAPTSII TNQDLAMKGA IAKVFPNTRH RLCIWHIKNK 360 FVEKLSQVYY KRSKFKVEVK KCIWKTYTKE DFEERWMALI KEYELETNEW LQQLYDIRES 420 WVPVYNRGTF FAGMNTTGRS EGVNSFFDGF VTSTINLKEF VVKYEQALKK IVKRESDENF 480 ELEHKFRIVN EGEFLLKYAA KIYTRNVFNK FKDEISEVFR YKVEDVGNTN RFQSFVVKSK 540 VCEFEKFIVT LDSQTYEGRC EYQKFEFVGI LCTHILKVFV RLDIDAIPDH FILPRWRQKA 600 NKFRIIDSEE LVHDDGKEES EALRLSHMCQ ESTKLACLAA PSNEAYTIYI ETMNGLFEKL 660 IKVTSYVPPM DVCLEKDNVH TIEPSQILIS DPNISQTKGR KKDAMGKFSH GKGPNISQSH 720 FA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 111 | PKKRKKS |
2 | 106 | 110 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008219733.2 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A251QDD0 | 0.0 | A0A251QDD0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008219733.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-130 | FAR1-related sequence 5 |