PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn162391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 787aa    MW: 86584.7 Da    PI: 6.4451
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn162391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-18563357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Achn162391  5 KYVRYTPEQVEALERVYSECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                6789*****************************************************97 PP
2bZIP_120.11.4e-0657991860
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60
                rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v++l 
  Achn162391 57 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLV 99
                9***************************************985 PP
3START166.22.3e-521533612205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++ +Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l +i +   g ++l ++++
  Achn162391 153 IAEETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRNCRCLDVLSTIPTEngGMIELLYMQT 250
                 68999*****************************************************.8888888888***************98888********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+  Rdf+++Ry+  l++g++vi+++S++s +  p+    s +vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l++s+ + ++
  Achn162391 251 YAPTTLAVaRDFWTLRYTTNLQDGSLVICERSLTSSTGGPTgppASCFVRAEMLPSGYLIRPCDGGGSIIHIVDHIDLDAWSVPEVLRPLYESSKILAQ 349
                 ****99888***************************99999898999**************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 k++va+l++ ++
  Achn162391 350 KMTVAALRHVRQ 361
                 *******98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.823164IPR001356Homeobox domain
SMARTSM003891.8E-15268IPR001356Homeobox domain
CDDcd000861.18E-16565No hitNo description
PfamPF000462.7E-16563IPR001356Homeobox domain
SuperFamilySSF466891.37E-16567IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-18763IPR009057Homeodomain-like
CDDcd146861.63E-65796No hitNo description
PROSITE profilePS5084825.363143371IPR002913START domain
CDDcd088752.57E-66147363No hitNo description
Gene3DG3DSA:3.30.530.206.2E-22150357IPR023393START-like domain
SMARTSM002341.8E-48152362IPR002913START domain
SuperFamilySSF559618.1E-38153364No hitNo description
PfamPF018524.8E-50153361IPR002913START domain
PfamPF086705.2E-32689785IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YSECPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY DNGYMRTQLH TVSTTATTDA  120
SCESVVLSDQ HQQQNPTPRL QRDANNPASL LAIAEETLAE FLSKATGTAV NWVQMIGMKP  180
GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRP SWFRNCRCLD VLSTIPTENG  240
GMIELLYMQT YAPTTLAVAR DFWTLRYTTN LQDGSLVICE RSLTSSTGGP TGPPASCFVR  300
AEMLPSGYLI RPCDGGGSII HIVDHIDLDA WSVPEVLRPL YESSKILAQK MTVAALRHVR  360
QIAQETSGEI QYSGGRQPAV LRTFSQRLCR GFNDAINGFM DDGWSVMGSD GVEDVTIAIN  420
SSPSKFPGSQ YNTLSVLPSF GGVVCAKASM LLQNVPPAVL VRFLREHRPE WADYGIDAYS  480
AACLKANPCA FPCARPSGFP SSPVILPLAH TVEHEELCSG VDDNATGACA QLVFAPIDES  540
FADDAPLLPS GFRVIPLDPK SDDPYATRTL DLASTLEVGR GGVRRSDEDS SSYNHQSVLT  600
IAFQFTFESH FRDNVATMAR QYVRSVVGSV QRVAMAIAPS PLGSHLGPKS LPASPEAHTL  660
AQWICRSYRC YVSEFTLAES CFKSMLKGAS AVFTFANQAG LDMLETTFVA LQDIMLDKVL  720
DEAGRRILLS EFSKIMQQGF AYLPAGICVS SMGRPVSYEQ AIAWKVLEDN DSNHCLAFMF  780
TNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9382110.0AB938211.1 Sarracenia purpurea PHB mRNA for phabulosa, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114332.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2R6QAM20.0A0A2R6QAM2_ACTCH; Homeobox-leucine zipper protein like
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]