PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn159561

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 329aa MW: 36817.8 Da PI: 7.5841

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn159561	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.6	1.1e-08	57	123	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC.....................TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas..................kapskKlsKaeiLekAveYIksL 54 rE+ RRdr+N+ f eL l + ++ +K++Ka+iL+ +++ +k+L Achn159561 57 ADREKLRRDRLNEQFLELGNALVFLGlvkssgshfqritllnstDPDRPKNDKATILTDTIQVLKDL 123 679***************99996669***********8888899************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.976	51	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.66E-5	52	127	No hit	No description
SuperFamily	SSF47459	5.5E-11	52	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-10	54	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-6	56	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-7	57	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGMEIVKLHP ALKEKQCIRA NASHGVPIDG EELSLMGKQK HEVEVKDPIA ARKFQKADRE 60 KLRRDRLNEQ FLELGNALVF LGLVKSSGSH FQRITLLNST DPDRPKNDKA TILTDTIQVL 120 KDLTAEVNRL KAECTVLSEE SHELTQEKNE LREEKTSLKS DIDNLNLQYH QRVRDVFPWA 180 AIDSSFVMAP PRYPYPVHLP VPTGPIPMLP ALQPLPFFGN HNPGAIPNTC STYIPYPAPA 240 SHLSDQQSHQ CASTSCIPSK SDPQSKKLDR CRGSNNDKTD ESNDVVTDLE LKMPGSTAQQ 300 VGILNRYRVT QSGDIDLVTF FALRRSYR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021274838.1	1e-114	transcription factor bHLH121 isoform X3
Swissprot	Q9LT23	5e-70	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2R6RIT0	1e-160	A0A2R6RIT0_ACTCH; Transcription factor bHLH121 like
STRING	EOX90849	1e-112	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5456	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-72	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]