PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn159391

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 206aa MW: 24226.1 Da PI: 6.5354

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn159391	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	6.9e-05	23	42	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 C+ Cg+ F+++ +L++H r Achn159391 23 HCSVCGRKFRTSLDLEKHFR 42 5*****************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.18	22	50	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MSAANAGRLD FLERKGAALR TLHCSVCGRK FRTSLDLEKH FRQLRERERQ KKLNRMRSLK 60 RKKRQGYKER FVANNHKYME AMRDLITPKV GNLYEKTRGR YASKEKPLTV EVRIEGKLDT 120 LVRSTEISAP SEREEEEEEE EENWASEEVN HEYDEDGDFL FDVDKEESEK DDVYFWYSEV 180 SWVLQTWTSY SFGSIPCSGT KCEGK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-30	C2H2-like zinc finger protein