PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn158101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 877aa MW: 100716 Da PI: 5.9824 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.3 | 4e-26 | 75 | 161 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA vGFsvrk+ ++sk +g++++r+f+Cskeg+r+++k++ ++ +++r+etrtgC a++ ++++ dgk+++t++e +HnH+ Achn158101 75 RFYSKYAGLVGFSVRKDWVNRSKVHGRVVSRKFTCSKEGQRRKDKRD-VNVKKHRKETRTGCLAHMIITRQPDGKYRITHFEANHNHD 161 5*******************************************999.999************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-23 | 75 | 161 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.6E-27 | 289 | 382 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.792 | 569 | 605 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.6E-7 | 580 | 607 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 1.0E-4 | 580 | 605 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MDRSDDDLVS SHEDDMDMRL QVSNNLDLNI EQDCRSPKVA HVRSLQSTLS SKDESNSEGV 60 LKVGMEFESD EYAYRFYSKY AGLVGFSVRK DWVNRSKVHG RVVSRKFTCS KEGQRRKDKR 120 DVNVKKHRKE TRTGCLAHMI ITRQPDGKYR ITHFEANHNH DNVNPGNAQN LQELPLQQGT 180 VDGTGVTEAN SSSNLEKQSQ LAFQLLGRQF GAGENLDYPA IYFDNYLKSG RTRDLKEGEA 240 GCLLYYFQRQ HFENPSFFHA IQLDVDDKIS NIFWADDNMV LDYDHFGDVV CLDTAYRTNK 300 DFRPFVQFLG LNHHRQVVIF GAGLMYDETI DSFKWLFQTF IEAMSGKKPK AILTYQDATI 360 IQAIDSVLPE TNHRVCVWQM YQDALEHLSH VTKDADSFAN DLRSCIFDHE DEEDFINAWD 420 AMIDKFTLQK NDWLRWMFRE KEKWAVVYGK NTFFIDMKST HLGEDLSNNL REYLNTDVDV 480 LQFFMRFESM VNEQRFKELE ANYDMGRCTP RLMANVILLK HASDLYTPKA FEVFQREYEK 540 CLNVVVNLCS GNGSLFEYKA NTFGKPREHT VTYNSTDDTV TCSCMKFEYV GVLCCHALKV 600 LDHRNIKVLP ACYILKRWTR DARVESLRES FRTSLEENPK LITASRYREL CQRILKISAR 660 AADSDQAFEY AARQLDEVMQ GVEKMLTLKP TEETQALTSS STGAYASESE HTEIFLDRNA 720 IEGQDDSHTF MQINEREIMG KDPLNNLGEK ISKTKTSQNV HPPPPDTVTS NSTSCLPPAY 780 VSSASSSLNH VSQDFYNFGA NQVVQCLYQP PNIAMDQQPS PDVYQPPSLL SNQHDSLSQA 840 QLLQAMDLDV QHPHSTSFIR FDQRHRASNG HYFGSK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122242.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X3 | ||||
TrEMBL | A0A2R6RQU3 | 0.0 | A0A2R6RQU3_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | EOY23112 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-111 | FAR1-related sequence 5 |