PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn158101

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 877aa MW: 100716 Da PI: 5.9824

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn158101	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.3	4e-26	75	161	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA vGFsvrk+ ++sk +g++++r+f+Cskeg+r+++k++ ++ +++r+etrtgC a++ ++++ dgk+++t++e +HnH+ Achn158101 75 RFYSKYAGLVGFSVRKDWVNRSKVHGRVVSRKFTCSKEGQRRKDKRD-VNVKKHRKETRTGCLAHMIITRQPDGKYRITHFEANHNHD 161 5*****************************************999.999**********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-23	75	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.6E-27	289	382	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.792	569	605	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-7	580	607	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.0E-4	580	605	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MDRSDDDLVS SHEDDMDMRL QVSNNLDLNI EQDCRSPKVA HVRSLQSTLS SKDESNSEGV 60 LKVGMEFESD EYAYRFYSKY AGLVGFSVRK DWVNRSKVHG RVVSRKFTCS KEGQRRKDKR 120 DVNVKKHRKE TRTGCLAHMI ITRQPDGKYR ITHFEANHNH DNVNPGNAQN LQELPLQQGT 180 VDGTGVTEAN SSSNLEKQSQ LAFQLLGRQF GAGENLDYPA IYFDNYLKSG RTRDLKEGEA 240 GCLLYYFQRQ HFENPSFFHA IQLDVDDKIS NIFWADDNMV LDYDHFGDVV CLDTAYRTNK 300 DFRPFVQFLG LNHHRQVVIF GAGLMYDETI DSFKWLFQTF IEAMSGKKPK AILTYQDATI 360 IQAIDSVLPE TNHRVCVWQM YQDALEHLSH VTKDADSFAN DLRSCIFDHE DEEDFINAWD 420 AMIDKFTLQK NDWLRWMFRE KEKWAVVYGK NTFFIDMKST HLGEDLSNNL REYLNTDVDV 480 LQFFMRFESM VNEQRFKELE ANYDMGRCTP RLMANVILLK HASDLYTPKA FEVFQREYEK 540 CLNVVVNLCS GNGSLFEYKA NTFGKPREHT VTYNSTDDTV TCSCMKFEYV GVLCCHALKV 600 LDHRNIKVLP ACYILKRWTR DARVESLRES FRTSLEENPK LITASRYREL CQRILKISAR 660 AADSDQAFEY AARQLDEVMQ GVEKMLTLKP TEETQALTSS STGAYASESE HTEIFLDRNA 720 IEGQDDSHTF MQINEREIMG KDPLNNLGEK ISKTKTSQNV HPPPPDTVTS NSTSCLPPAY 780 VSSASSSLNH VSQDFYNFGA NQVVQCLYQP PNIAMDQQPS PDVYQPPSLL SNQHDSLSQA 840 QLLQAMDLDV QHPHSTSFIR FDQRHRASNG HYFGSK*

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MDRSDDDLVS SHEDDMDMRL QVSNNLDLNI EQDCRSPKVA HVRSLQSTLS SKDESNSEGV  60
LKVGMEFESD EYAYRFYSKY AGLVGFSVRK DWVNRSKVHG RVVSRKFTCS KEGQRRKDKR  120
DVNVKKHRKE TRTGCLAHMI ITRQPDGKYR ITHFEANHNH DNVNPGNAQN LQELPLQQGT  180
VDGTGVTEAN SSSNLEKQSQ LAFQLLGRQF GAGENLDYPA IYFDNYLKSG RTRDLKEGEA  240
GCLLYYFQRQ HFENPSFFHA IQLDVDDKIS NIFWADDNMV LDYDHFGDVV CLDTAYRTNK  300
DFRPFVQFLG LNHHRQVVIF GAGLMYDETI DSFKWLFQTF IEAMSGKKPK AILTYQDATI  360
IQAIDSVLPE TNHRVCVWQM YQDALEHLSH VTKDADSFAN DLRSCIFDHE DEEDFINAWD  420
AMIDKFTLQK NDWLRWMFRE KEKWAVVYGK NTFFIDMKST HLGEDLSNNL REYLNTDVDV  480
LQFFMRFESM VNEQRFKELE ANYDMGRCTP RLMANVILLK HASDLYTPKA FEVFQREYEK  540
CLNVVVNLCS GNGSLFEYKA NTFGKPREHT VTYNSTDDTV TCSCMKFEYV GVLCCHALKV  600
LDHRNIKVLP ACYILKRWTR DARVESLRES FRTSLEENPK LITASRYREL CQRILKISAR  660
AADSDQAFEY AARQLDEVMQ GVEKMLTLKP TEETQALTSS STGAYASESE HTEIFLDRNA  720
IEGQDDSHTF MQINEREIMG KDPLNNLGEK ISKTKTSQNV HPPPPDTVTS NSTSCLPPAY  780
VSSASSSLNH VSQDFYNFGA NQVVQCLYQP PNIAMDQQPS PDVYQPPSLL SNQHDSLSQA  840
QLLQAMDLDV QHPHSTSFIR FDQRHRASNG HYFGSK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122242.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X3
TrEMBL	A0A2R6RQU3	0.0	A0A2R6RQU3_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	EOY23112	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-111	FAR1-related sequence 5