PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn157501
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 275aa    MW: 30982.4 Da    PI: 6.7888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn157501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.7e-1486137155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h  +Er+RR+riN+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  Achn157501  86 QRMTHIVVERNRRKRINHYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 137
                 79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.79E-1484141No hitNo description
Gene3DG3DSA:4.10.280.103.8E-1484141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.61885136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-1685149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1186137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-991142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MALEAVVLQQ DPFTKDLYPI GDTTVGGSNS YGLGFEEVHL FCGYCTSDGE DAGGFPQEGS  60
PVLAQGPRKR KRRTRGMKNK EEMERQRMTH IVVERNRRKR INHYLAVLRS LMPPSYAQRG  120
DQASIVGGAI NFVKELEQRV QCLEAHKQLD SPLFANFFTF PQYSTWSTWH DDPVMTGCDS  180
EAAIEVNMVE THANIKIVSR RQPKQVSKMV VWFHSRGLTI LHLMVTTVEP MVLYSFSVKV  240
EDDCQLSTVN EIATTVHEMM SKIQVESSEI PIAI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772RKRKRR
28697RMTHIVVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652690.15e-91PREDICTED: transcription factor bHLH94
SwissprotQ9C7T41e-64BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2R6RDB20.0A0A2R6RDB2_ACTCH; Transcription factor bHLH96 like
STRINGVIT_07s0191g00240.t012e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]