![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn157391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 248aa MW: 28044.4 Da PI: 7.9057 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.3 | 6.4e-32 | 66 | 120 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rY+eClkNhA+ +GghavDGCgEfmp+ g++g+ +al+CaAC+CHRnFHR++++ Achn157391 66 KPRYRECLKNHAIGIGGHAVDGCGEFMPA-GADGSLDALRCAACNCHRNFHRKDTD 120 679*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-22 | 62 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.5E-29 | 68 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.9E-29 | 68 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.453 | 69 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.64E-19 | 173 | 245 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-32 | 173 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.2E-27 | 184 | 240 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MSAQKQVRKC VLERESVHDD EAKKKFNMEF EDEQDEEIEL PYENSSQHKM PNAGGRVADA 60 PPQSRKPRYR ECLKNHAIGI GGHAVDGCGE FMPAGADGSL DALRCAACNC HRNFHRKDTD 120 APPHHHHAHP LLLPHHPQQF TPYYRTQPSG YLHVQQRPLA LPSTSGGGGG QEDDDTTNMS 180 AGSKKRFRTK FTQEQKDKML ELAEKLGWRI QKHDDDVIQQ FCDETGVKRQ VLKVWMHNNK 240 HTLGKKP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-27 | 183 | 242 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016740746.1 | 5e-94 | PREDICTED: zinc-finger homeodomain protein 2-like isoform X2 | ||||
Swissprot | Q6YXH5 | 5e-77 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2R6RDD0 | 1e-164 | A0A2R6RDD0_ACTCH; Zinc-finger homeodomain protein | ||||
STRING | Gorai.003G042700.1 | 2e-93 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-70 | homeobox protein 22 |
Publications ? help Back to Top | |||
---|---|---|---|
|